View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1460_low_13 (Length: 447)
Name: NF1460_low_13
Description: NF1460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1460_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 19 - 436
Target Start/End: Complemental strand, 43937806 - 43937390
Alignment:
| Q |
19 |
atatcactcttaagagtaaaaacacaatactaagagtagtccaaaattgtcgcaaaatattggtacaaatatcatttctcatagagaaaaaatgatagtt |
118 |
Q |
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| T |
43937806 |
atatcactct-aagagtaaaaacacaatactaggagtagtccaaaattgtcaaaaaatattggtacaaatatcatttctcacagagaaaaaatgatagtt |
43937708 |
T |
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| Q |
119 |
taacaactaaatctttgatttagtcgcttttagttggaatnnnnnnntaactatgaaaactcttgtcgaagaaaacagagtatattgacggggattaggg |
218 |
Q |
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| T |
43937707 |
taacaacgaaatctttgatttagtcgcttttagttggaataaaaaaataactatgaaaactcttgtcgaagaaaacagagtatattgacggggattaggg |
43937608 |
T |
|
| Q |
219 |
tttttggtcctaaattgtaatcctaacaagaaacgcaaatgaaatgaatggctgtttgtttttgaatttgaattactacaaatcagtaacgaatgccgca |
318 |
Q |
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| T |
43937607 |
tttttggtcctaaattgtaatcctaacaagaaacgcaaatgaaatgaatggctgtttgtttttgaatttgaattactacaaatcagtaacgaatgccgca |
43937508 |
T |
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| Q |
319 |
gcaaactacgaggagcatggcgacgcagctgagcgatgttgattacatcaccaccttgcaagccagggtcaaggtactgtactttctttcagccaatttt |
418 |
Q |
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| T |
43937507 |
gcaaactacgaggagcatggcgacgcagctgagcgatgttgattacatcaccaccttgcaagccagggtcaaggtactgtactttctttcagccaatttt |
43937408 |
T |
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| Q |
419 |
ctcattcaaaaccttcat |
436 |
Q |
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| T |
43937407 |
ctcattcaaaaccttcat |
43937390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 101
Target Start/End: Original strand, 13355092 - 13355132
Alignment:
| Q |
61 |
aaaattgtcgcaaaatattggtacaaatatcatttctcata |
101 |
Q |
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| T |
13355092 |
aaaattgtcgcaaaatagttgtaaaaatatcatttctcata |
13355132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 98
Target Start/End: Complemental strand, 15564948 - 15564911
Alignment:
| Q |
61 |
aaaattgtcgcaaaatattggtacaaatatcatttctc |
98 |
Q |
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| T |
15564948 |
aaaattgtcgcaaaatagttgtacaaatatcatttctc |
15564911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 1814345 - 1814381
Alignment:
| Q |
65 |
ttgtcgcaaaatattggtacaaatatcatttctcata |
101 |
Q |
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| T |
1814345 |
ttgtcgcaaaatagttgtacaaatatcatttctcata |
1814381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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