View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1460_low_14 (Length: 446)
Name: NF1460_low_14
Description: NF1460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1460_low_14 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 22 - 440
Target Start/End: Complemental strand, 10760526 - 10760108
Alignment:
| Q |
22 |
agcctaatcgagtaaagttgaaccggttcttgagtgagacgaggttttgagtcatcatctgaagagtaaacacattgaaggtcatgtttggtgtgatagc |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
10760526 |
agcctaatcgagtaaagttgaaccggttcttgagtgagacgaggttttgagtcatgatctgaagagtaaacacattgaaggtcacgtttggtgtgatagc |
10760427 |
T |
|
| Q |
122 |
gaaaagataaagggtagtttaagaacattaaaacatgatcaggaagcataactgtttcccgaattgtgatttggggtggcactggagttggccatttcaa |
221 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10760426 |
gaaaagataaagggtagtttaagaaaattaaaacatgatcaggaagcaaaactgtttcccgaattgtgatttggggtggcactggagttggccatttcaa |
10760327 |
T |
|
| Q |
222 |
agctgcaattgggatgtgaaatcgagggaggtagaaggggtggatggatgaaataattagggaggtaaagataatggaagataagacaaccacaatagtg |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10760326 |
agctgcaattgggatgtgaaatcgagggaggtagaaggggtggatggatgaaataattagggaggtaaagataatggaagataagacaaccacaatagtg |
10760227 |
T |
|
| Q |
322 |
aaccagaagaatgtgctccatgaaatggctctgctatgttttctatgatctttcatgagagaaacccaaaacgagaagaaaaatgtaatagtaatgttct |
421 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10760226 |
aaccaaaagaatgtgctccatgaaatggctctgctatgttttctatgatctttcatgagagaaacccaaaacgagaagaaaaatgtaatagtaatgttct |
10760127 |
T |
|
| Q |
422 |
ttgggttgcttcatctcac |
440 |
Q |
| |
|
|||||||||||||| |||| |
|
|
| T |
10760126 |
ttgggttgcttcatgtcac |
10760108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University