View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1460_low_15 (Length: 437)
Name: NF1460_low_15
Description: NF1460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1460_low_15 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 9 - 437
Target Start/End: Original strand, 3922851 - 3923279
Alignment:
| Q |
9 |
caaaggtctgccgtataatgcacacttattaaatatagactcaaatggaaaagtaaatgtagactgagatgtccaagtaaacttcactgccaaatggatt |
108 |
Q |
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| T |
3922851 |
caaaggtctgccgtataatgcacacttattaaatatagactcaaatggaaaagtaaatgtagactgagatgtccaagtaaacttcactgccaaatggatt |
3922950 |
T |
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| Q |
109 |
tcacccatcttagttacaccagagggatgtaaacctataagagggtaagaatgtgcatacactttgccgttttcaagtgttgatagacgaatccttatct |
208 |
Q |
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| T |
3922951 |
tcacccatcttagttacaccagagggatgtaaacctataagagggtaagaatgtgcatacactttgccgttttcaagtgttgatagacgaatccttatct |
3923050 |
T |
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| Q |
209 |
tagccattatagtatctcttgcacctctggctctactttcaggatctaactgattgttatcaaaaactccaatagtaatgactgtgaatggctcataaac |
308 |
Q |
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| T |
3923051 |
tagccattatagtatctcttgcacctctggctctactttcaggatctaactgattgttatcaaaaactccaatagtaatgactgtgaatggctcataaac |
3923150 |
T |
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| Q |
309 |
tttccaaacatattgctcattccatcttggttcacggctgtcaacactggttcttgtccttacccattttggtccatatttcgccacacaatatgcatcg |
408 |
Q |
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| T |
3923151 |
ttcccaaacatattgctcattccatcttggttcacggctgtcaacacttgttcttgtccttacccattttggtccatatttcgccacacaatatgcatcg |
3923250 |
T |
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| Q |
409 |
gttctccccccaatcttcattggcatcaa |
437 |
Q |
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| T |
3923251 |
gttctccccccaatcttcattggcatcaa |
3923279 |
T |
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