View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1460_low_17 (Length: 430)
Name: NF1460_low_17
Description: NF1460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1460_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 7 - 416
Target Start/End: Complemental strand, 40031990 - 40031580
Alignment:
| Q |
7 |
gtgagaagaattgcgaatgatctcatattttaatcttcatttataaggaagattttatgcatgtgatcaaagagccaaggttatttcatttcattaataa |
106 |
Q |
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| T |
40031990 |
gtgataagaattgcgaatgatctcatattttaatcttcatttataaggaagattttatgcatgtgatcaaagagccaaggttatttcatttcattaataa |
40031891 |
T |
|
| Q |
107 |
acatgagaaa-aaggaataaccgaagattggctaactaatacacttgcactagcagggtaatagaagctaaaccataaaaccagtaacaaaacaacaaaa |
205 |
Q |
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| T |
40031890 |
acatgagaaacaaggaataaccgaagattggctaactaatacacttgcactagcagggtaatagaagctaaaccataaaaccagtaacaaaacaacaaaa |
40031791 |
T |
|
| Q |
206 |
ggaacctctaacataaaagctaatcttccctagaaacaaagcaagaaaataagccccacacccctgcttcaacctgctaaaaaagacataaaaaattgtc |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
40031790 |
ggaacctctaacataaaagctaatcttccctagaaacaaagcaagaaaataagccccacacccctgcttcaacctgctaaaaaagacatcaaaaattgtc |
40031691 |
T |
|
| Q |
306 |
cccaacaccaaattcctgcaaaacctactgcaaggaaaaccagaaaaaacgaacccgtgaagcaaaaagtttccatgctatataatagcaaagcaagctt |
405 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40031690 |
cccaacaccaaattcctgcaaaacctactgcaaggaaaaccagaaaaaatgaacccgtgaagcaaaaagtttccatgctatataatagcaaagcaagctt |
40031591 |
T |
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| Q |
406 |
gggaaattatg |
416 |
Q |
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| T |
40031590 |
gggaaattatg |
40031580 |
T |
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