View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1460_low_19 (Length: 428)
Name: NF1460_low_19
Description: NF1460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1460_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 16 - 410
Target Start/End: Complemental strand, 54348193 - 54347795
Alignment:
| Q |
16 |
gaagatggagccggcaaggacgatggtgtaacggcgaccaatccagtcagaggttcggccagcgaggcaggaacctattaaggagaaaaggttgatgatg |
115 |
Q |
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| T |
54348193 |
gaagatggagccagcaaggacgatggtgtaacggcgaccaatccagtcagaggttcggccggcgaggcaggaacctattaaggagaaaaggttgatgatg |
54348094 |
T |
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| Q |
116 |
cctactaggatttcaatttggacattagatagtttgaggtctctttttatgtatatcactgctccactcatcaccccaatatctgcataacataaaataa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54348093 |
cctactaggatttcaatttggacattagatagtttgaggtctctttttatgtatatcactgctccactcatcaccccaatatctgcataacataaaataa |
54347994 |
T |
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| Q |
216 |
catacatatagttagttaatgtccatacatttccatgcatgtttactatctagctatgtatcaatatgtatggaggtaaatatatacattata----tag |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
54347993 |
catacatatagttagttaatgtccatacatttccatgcatgtttactatctagctatgtatcaatatgtatggaggtaaatatatacattatatatgtag |
54347894 |
T |
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| Q |
312 |
tcactacttaccataaccaagtaaaatggaagtcatggaagccaatatagcacaggcgaaagcaaacttgttcgattcgggtttcttttgagaatcaaa |
410 |
Q |
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| T |
54347893 |
tcactacttaccataaccaagtaaaatggaagtcatggaagccaatatagcacaggcgaaagcaaacttgttcgattcgggtttcttttgagaatcaaa |
54347795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 319 - 383
Target Start/End: Complemental strand, 26152478 - 26152414
Alignment:
| Q |
319 |
ttaccataaccaagtaaaatggaagtcatggaagccaatatagcacaggcgaaagcaaacttgtt |
383 |
Q |
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| T |
26152478 |
ttaccatatccaagcaaaatggaagtcatggaagccaacatagcacaagcaaaagcatacttgtt |
26152414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 319 - 380
Target Start/End: Complemental strand, 26152338 - 26152277
Alignment:
| Q |
319 |
ttaccataaccaagtaaaatggaagtcatggaagccaatatagcacaggcgaaagcaaactt |
380 |
Q |
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|||||||| ||||| ||||||||||||||||||||||| |||||||| || |||||| |||| |
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| T |
26152338 |
ttaccatatccaagcaaaatggaagtcatggaagccaacatagcacaagcaaaagcatactt |
26152277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 316 - 384
Target Start/End: Complemental strand, 27318460 - 27318392
Alignment:
| Q |
316 |
tacttaccataaccaagtaaaatggaagtcatggaagccaatatagcacaggcgaaagcaaacttgttc |
384 |
Q |
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| T |
27318460 |
tacttaccatatccaagtaggatagaagtcatagaagccaagatagcacaagcacaagcaaacttgttc |
27318392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 143 - 199
Target Start/End: Complemental strand, 26152768 - 26152712
Alignment:
| Q |
143 |
gatagtttgaggtctctttttatgtatatcactgctccactcatcaccccaatatct |
199 |
Q |
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|||| ||| ||||||||||||||||| || ||||||||||||| || ||||||||| |
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| T |
26152768 |
gatactttaaggtctctttttatgtagattgctgctccactcataacaccaatatct |
26152712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 152 - 200
Target Start/End: Complemental strand, 27318815 - 27318767
Alignment:
| Q |
152 |
aggtctctttttatgtatatcactgctccactcatcaccccaatatctg |
200 |
Q |
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| T |
27318815 |
aggtctctttttatatagatggctgctccactcatcacaccaatatctg |
27318767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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