View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1460_low_2 (Length: 690)
Name: NF1460_low_2
Description: NF1460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1460_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 485; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 1 - 493
Target Start/End: Complemental strand, 52698910 - 52698418
Alignment:
| Q |
1 |
tacaataacctgaagaaacctagtgaatgggcttcccattggtttttgaaaacgataatacggaataccaacggccaagataacgatagatataatcgta |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52698910 |
tacaataacctgaagaaacctagtgaatgggcttcccattggtttttgaaaacgataatacggaataccaacggccaagataacgatagatataatcgta |
52698811 |
T |
|
| Q |
101 |
gttattgtgggtaatgcaaaaccccaactccaccctacttggttttgtaaataaaccaatagtgtaattccaagaagggcacccatgttgatggcaaagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52698810 |
gttattgtgggtaatgcaaaaccccaactccaccctacttggttttgtaaataaaccaatagtgtaattccaagaagggcacccatgttgatggcaaagt |
52698711 |
T |
|
| Q |
201 |
aaaaccaattaaagaaagagaatttcatttggacttctttttcatctccctcgtcaaattgatcagctccaaatgaggaaacacaaggtttgattcctcc |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52698710 |
aaaaccaattaaagaaagagaatttcatttggacttctttttcatctccctcgtcaaattgatcagctccaaatgaggaaacacaaggtttgattcctcc |
52698611 |
T |
|
| Q |
301 |
agtacccaaggcaatgaggccaagtgcactatacaagaataagttttggccttggcttgcttctttgcacggtgtcactttcacagcgcattttggcggg |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
52698610 |
agtacccaaggcaatgaggccaagtgcactatacaagaataagttttggccttggcttgcttctttgcacggtgtcactttcacagcacattttggcggg |
52698511 |
T |
|
| Q |
401 |
tgcaatgtggcaaaggaggccgaaattgttagcataatcattccctgtgacataattcacaaaataataaacacatcaatatttgcacttagc |
493 |
Q |
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| T |
52698510 |
tgcaatgtggaaaaggaggccgaaattgttagcataatcattccctgtgacataattcacaaaataataaacacatcaatatttgcacttagc |
52698418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 165; E-Value: 7e-88
Query Start/End: Original strand, 1 - 373
Target Start/End: Complemental strand, 52712729 - 52712357
Alignment:
| Q |
1 |
tacaataacctgaagaaacctagtgaatgggcttcccattggtttttgaaaacgataatacggaataccaacggccaagataacgatagatataatcgta |
100 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||| ||||| ||||| |||||| ||| ||| | || | | ||||||||||| || |||| |
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| T |
52712729 |
tacaataacctgaagaaacctagtaaaagggcttcccattggcttttggaaacggtaataccgaacaccggcagctagaacaacgatagataaaaccgta |
52712630 |
T |
|
| Q |
101 |
gttattgtgggtaatgcaaaaccccaactccaccctacttggttttgtaaataaaccaatagtgtaattccaagaagggcacccatgttgatggcaaagt |
200 |
Q |
| |
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||||||||||| | | |||||||||||| |||||||| || | |||| ||||||||||| || ||||||||||| |||||||||||||| |||||| |
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| T |
52712629 |
gttattgtgggaattccaaaaccccaaccccaccctagtttatcttgtgcataaaccaatatcgtgattccaagaagagcacccatgttgatagcaaaga |
52712530 |
T |
|
| Q |
201 |
aaaaccaattaaagaaagagaatttcatttggacttctttttcatctccctcgtcaaattgatcagctccaaatgaggaaacacaaggtttgattcctcc |
300 |
Q |
| |
|
|||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||| || |||||||| || || |||||||||||||||||||| |
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| T |
52712529 |
aaaaccaattaaagaaagcgtatttcttttggacttctttttcatctccctcgtcaaattggtctgctccaaaggatgatacacaaggtttgattcctcc |
52712430 |
T |
|
| Q |
301 |
agtacccaaggcaatgaggccaagtgcactatacaagaataagttttggccttggcttgcttctttgcacggt |
373 |
Q |
| |
|
||||| ||||||||||| |||||||||| ||||||||| || |||| |||| |||||||| | ||||||| |
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| T |
52712429 |
ggtacctaaggcaatgagaccaagtgcaccgtacaagaatgagatttgagcttgacttgcttcctggcacggt |
52712357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 1 - 487
Target Start/End: Complemental strand, 52721550 - 52721072
Alignment:
| Q |
1 |
tacaataacctgaagaaacctagtgaatgggcttcccattggtttttgaaaacgataatacggaataccaacggccaagataacgatagatataatcgta |
100 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||| ||||||||||| |||||| ||| |||| | || | | ||||||||||| || | || |
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|
| T |
52721550 |
tacaataacctgaagaaacctagtaaaagggcttcccattggcttttgaaaacggtaataccgaacaccagcagctagaagaacgatagataaaaccata |
52721451 |
T |
|
| Q |
101 |
gttattgtgggtaatgcaaaaccccaactccaccctacttggttttgtaaataaaccaatagtgtaattccaagaagggcacccatgttgatggcaaagt |
200 |
Q |
| |
|
||||||||||||| | |||||||||||| |||||||| || | |||| ||||||||||| || ||||||||||| | |||||||||||| |||||| |
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|
| T |
52721450 |
gttattgtgggtattccaaaaccccaaccccaccctagtttatcttgtgcataaaccaatatcgtgattccaagaagagaacccatgttgatagcaaaga |
52721351 |
T |
|
| Q |
201 |
aaaaccaattaaagaaagagaatttcatttggacttctttttcatctccctcgtcaaattgatcagctccaaatgaggaaacacaaggtttgattcctcc |
300 |
Q |
| |
|
|||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||| || |||||||| || || |||||||| ||||||||||| |
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|
| T |
52721350 |
aaaaccaattaaagaaagcgtatttctgttggacttctttttcatctccctcgtcaaattggtctgctccaaaggatgatacacaaggcttgattcctcc |
52721251 |
T |
|
| Q |
301 |
agtacccaaggcaatgaggccaagtgcactatacaagaataagttttggccttggcttgcttctttgcacggtgtcactttcacagcgcattttggcggg |
400 |
Q |
| |
|
|||||||| ||||| ||||||||||||| |||||||| || |||||||||| ||||| || ||||| ||| || | ||| ||||| ||||| |
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|
| T |
52721250 |
tgtacccaaagcaataaggccaagtgcaccgtacaagaaggagatttggccttgacttgcctccttgcatggtttcgc-----cag-acatttctgcggg |
52721157 |
T |
|
| Q |
401 |
tgcaatgtggcaaaggaggccgaaattgttagcataatcattccctgtgacataattcacaaaataataaacacatcaatatttgca |
487 |
Q |
| |
|
||| |||| | || |||||||| ||||| |||| || ||| |||||||||| ||||||||||| ||| | ||||||||||||||| |
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|
| T |
52721156 |
cgcagtgtgtcgaaagaggccgacattgtcagcaaaaccatcccctgtgacaaaattcacaaaaaaat--agacatcaatatttgca |
52721072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 561 - 671
Target Start/End: Complemental strand, 52698316 - 52698206
Alignment:
| Q |
561 |
taaagttgttacaaattacaagtttgttatgattagttggtaaaatataggatttaccacagcatagatggtagagaaaacaatgatggttctaaatcga |
660 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52698316 |
taaagttgttacagattacaagtttgttatgattagttggtaaaatataggatttaccacagcatagatggtagagaaaacaatgatggttctaaatcga |
52698217 |
T |
|
| Q |
661 |
ccaaggtaagc |
671 |
Q |
| |
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||||||||||| |
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|
| T |
52698216 |
ccaaggtaagc |
52698206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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