View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1460_low_20 (Length: 427)
Name: NF1460_low_20
Description: NF1460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1460_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 9 - 302
Target Start/End: Original strand, 7625898 - 7626183
Alignment:
| Q |
9 |
ttattctaacttaacgcattagcccatggaatagggactttaagaacaataaatttgaagagcaaaaaatagagaggaagaaatgaagagacgagaggaa |
108 |
Q |
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| T |
7625898 |
ttattctaacttaacgcattaacccatggaatagggactttaagaacaataaatttgaagagaaaataatagagaggaagaaattaagagacgagaggaa |
7625997 |
T |
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| Q |
109 |
aactagattgagtggattgattgcagaatttgaattttgaaaaaatgatatagaaatcaaagatgagggagaacctgaattgtgctatataactttgtaa |
208 |
Q |
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| T |
7625998 |
aactagattgagtggatggattgcagaatttgaattttgaaaaaatgatatagaaatcaaagatgaggaagaaactgaattgtgcta--------tgtaa |
7626089 |
T |
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| Q |
209 |
tctttttattagttaaagattgttttttatcctaccttgttagtttctcgcacgtcctacgacattttggattacataatctgaattatgtaaa |
302 |
Q |
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| T |
7626090 |
tctttctattaattaaagattgttttttatcctactttattagtttctcgcacgtcctacgacacttcggattacataatctaaattatgtaaa |
7626183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 248 - 408
Target Start/End: Original strand, 7626184 - 7626344
Alignment:
| Q |
248 |
ttagtttctcgcacgtcctacgacattttggattacataatctgaattatgtaaaaacacgttaaaaacatcctccaacatcctatagtatttcagggga |
347 |
Q |
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| T |
7626184 |
ttagtttctcgcacgtcctacaacacttcgaattacatagtccgaattatgtagaaacacgttaaaaacatcctccaacaccctatagtatttcagggga |
7626283 |
T |
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| Q |
348 |
ttatttaatacctttttcatgggttttatttaaaacatcctcctctaatcgtagagggtga |
408 |
Q |
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| T |
7626284 |
ttatttaaaacctttttcatgggttttatttaaaacatcctcctctaatcgtagagggtga |
7626344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 297 - 329
Target Start/End: Complemental strand, 53860581 - 53860549
Alignment:
| Q |
297 |
tgtaaaaacacgttaaaaacatcctccaacatc |
329 |
Q |
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| T |
53860581 |
tgtaaaaacacgttaaaaacatccttcaacatc |
53860549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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