View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1460_low_21 (Length: 426)
Name: NF1460_low_21
Description: NF1460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1460_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 98 - 406
Target Start/End: Original strand, 56301597 - 56301905
Alignment:
| Q |
98 |
tattatatatagcgtgagggaaggaggtggagaaagtctcaacctcaattttgttgcatattgatattcctcaagaatttgaaaacgtacctcttacatc |
197 |
Q |
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| T |
56301597 |
tattatatatagtgtgagggaaggaggtggagaaagtctcaacctcaattttgttgcatattgatattcctcaagaatttgaaaacgtacctcttacatc |
56301696 |
T |
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| Q |
198 |
agcctaaggagatttaattcatatacactcatcatatgattactttctatgatcttnnnnnnnntaaagaaaacttttattgaaacaagaacatgttacg |
297 |
Q |
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| T |
56301697 |
agcctaaggagatttaattcatatacactcatcatatgattactttctatgatcttaaaaaaaataaagaaaacttttattgaaacaagaacatgttacg |
56301796 |
T |
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| Q |
298 |
agagtaaatgatttatggtgtgaagtggtacagtccaaagccatgctaagcctatttataacctaaacattatgatttcttacaccattcagatattata |
397 |
Q |
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| T |
56301797 |
agagtaaatgatttatggtgtgaagtggtacagtccaaagccatgctaagcctatttataacctaaacattatgacttcttacaccattcagatattata |
56301896 |
T |
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| Q |
398 |
aggctttaa |
406 |
Q |
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|||| |||| |
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| T |
56301897 |
aggccttaa |
56301905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 51
Target Start/End: Original strand, 56301502 - 56301540
Alignment:
| Q |
13 |
aatataattctaactttacttaatttcattttcagaagc |
51 |
Q |
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| T |
56301502 |
aatattattctaactttacttaatttcattttcagaagc |
56301540 |
T |
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