View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1460_low_22 (Length: 422)

Name: NF1460_low_22
Description: NF1460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1460_low_22
NF1460_low_22
[»] chr8 (3 HSPs)
chr8 (89-404)||(33588050-33588374)
chr8 (1-47)||(33588002-33588048)
chr8 (204-297)||(27075224-27075317)
[»] chr3 (3 HSPs)
chr3 (204-321)||(43089556-43089673)
chr3 (230-314)||(32932684-32932768)
chr3 (235-312)||(52932388-52932465)
[»] chr1 (3 HSPs)
chr1 (204-343)||(48247180-48247319)
chr1 (204-317)||(40351710-40351823)
chr1 (251-292)||(46581764-46581805)
[»] chr5 (1 HSPs)
chr5 (204-311)||(43045741-43045848)
[»] scaffold0184 (1 HSPs)
scaffold0184 (235-312)||(6402-6479)
[»] chr4 (1 HSPs)
chr4 (248-309)||(40335405-40335466)
[»] chr7 (1 HSPs)
chr7 (271-307)||(16066404-16066440)


Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-140; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 89 - 404
Target Start/End: Original strand, 33588050 - 33588374
Alignment:
Q  89 acaatgttatccagcaacatgcaacaatttaggacgcgcttttaccttcaatgtcttagtctgtgtttggtaacccggtcaaaaagccaaaaacgtgcgt 188  Q
    ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||  ||||    
T  33588050 acaatgttatccagcaacatgcaacaatttaggacgcccttttgccttcaatgtcttagtttgtgtttggtaacccggtcaaaaagccaaaaacacgcgt 33588149  T
Q  189 ccataccttcaaaagtg---------tgtttggttctcctctacccgtccaccaccatcgtaagtttagcttttcaaaatcaattttaggtgaagctcca 279  Q
    |||| ||||||||||||         ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  33588150 ccatgccttcaaaagtgattttacagtgtttggttctcctctacccgtccaccgccatcgtaagtttagcttttcaaaattaattttaggtgaagctcca 33588249  T
Q  280 attcctagcttcttgaaattgattctctcaacctcacatatgagttgatcaatttctcctttttacccttttgtgtacgactgaaatggtttgatatagg 379  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||    
T  33588250 attcctagcttcttgaaattgattctctcaacctcacatatgagttgatcaatttctcctttttacccttttgtgtacgattgaaatggtttgatacagg 33588349  T
Q  380 gctttcaaaaatctgtcgttcctta 404  Q
    |||||||||||||||||||||||||    
T  33588350 gctttcaaaaatctgtcgttcctta 33588374  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 33588002 - 33588048
Alignment:
Q  1 aaaccaaaggttgaatctacatgcgtgggatagcaatcatcaaaata 47  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  33588002 aaaccaaaggttgaatctacatgcgtgggatagcaatcatcaaaata 33588048  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 204 - 297
Target Start/End: Complemental strand, 27075317 - 27075224
Alignment:
Q  204 tgtgtttggttctcctctacccgtccaccaccatcgtaagtttagcttttcaaaatcaattttaggtgaagctccaattcctagcttcttgaaa 297  Q
    ||||||||||||||||| |||| || | || ||||| | |||| |||||||| ||||||| || ||  |||||||||||| |||||| ||||||    
T  27075317 tgtgtttggttctcctccacccctcaatcatcatcgcacgttttgcttttcagaatcaatgttgggcaaagctccaattcttagctttttgaaa 27075224  T

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Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 204 - 321
Target Start/End: Complemental strand, 43089673 - 43089556
Alignment:
Q  204 tgtgtttggttctcctctacccgtccaccaccatcgtaagtttagcttttcaaaatcaattttaggtgaagctccaattcctagcttcttgaaattgatt 303  Q
    ||||||||||||||||| |||  || |||| || || | ||||  ||||||| |||||||||||||||||||| ||||  ||||||||||||||| ||||    
T  43089673 tgtgtttggttctcctcaacctctctaccatcaccgcacgttttccttttcataatcaattttaggtgaagctacaatctctagcttcttgaaatcgatt 43089574  T
Q  304 ctctcaacctcacatatg 321  Q
    || ||||||| |||||||    
T  43089573 ctttcaacctgacatatg 43089556  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 230 - 314
Target Start/End: Complemental strand, 32932768 - 32932684
Alignment:
Q  230 accaccatcgtaagtttagcttttcaaaatcaattttaggtgaagctccaattcctagcttcttgaaattgattctctcaacctc 314  Q
    |||| ||||| | |||| |||||||| ||||||||||||| |||||||||||  ||| ||||||||||| |||||||||||||||    
T  32932768 accatcatcgcacgttttgcttttcataatcaattttaggagaagctccaatctctaacttcttgaaatcgattctctcaacctc 32932684  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 235 - 312
Target Start/End: Complemental strand, 52932465 - 52932388
Alignment:
Q  235 catcgtaagtttagcttttcaaaatcaattttaggtgaagctccaattcctagcttcttgaaattgattctctcaacc 312  Q
    ||||||| |||| ||||| ||||||||||||| ||||||||||  | ||||||||||| ||||| |||| ||| ||||    
T  52932465 catcgtacgttttgctttccaaaatcaattttgggtgaagctctgactcctagcttctggaaatcgattttctaaacc 52932388  T

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Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 204 - 343
Target Start/End: Complemental strand, 48247319 - 48247180
Alignment:
Q  204 tgtgtttggttctcctctacccgtccaccaccatcgtaagtttagcttttcaaaatcaattttaggtgaagctccaattcctagcttcttgaaattgatt 303  Q
    ||||||||||| ||||| |||  |||| || ||| ||| |||| ||||||| |||| ||||||||| |||||||||||  ||| ||||||||||| ||||    
T  48247319 tgtgtttggttatcctcaacctctccaacaacattgta-gttttgcttttcgaaattaattttaggagaagctccaatctctaacttcttgaaatcgatt 48247221  T
Q  304 ctctcaacctcacat-atgagttgatcaatttctccttttt 343  Q
    |||||||||| |||| | ||||  ||||||||| |||||||    
T  48247220 ctctcaacctgacataaggagtcaatcaatttccccttttt 48247180  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 317
Target Start/End: Original strand, 40351710 - 40351823
Alignment:
Q  204 tgtgtttggttctcctctacccgtccaccaccatcgtaagtttagcttttcaaaatcaattttaggtgaagctccaattcctagcttcttgaaattgatt 303  Q
    ||||||||||||||||| |||  || || |  |||| | |||| |||||| | |||||||||| || |||||||| | || |||||| ||||||  ||||    
T  40351710 tgtgtttggttctcctccacctctctactattatcgcacgttttgcttttgataatcaattttgggagaagctccgaatcttagctttttgaaagcgatt 40351809  T
Q  304 ctctcaacctcaca 317  Q
    ||||||||| ||||    
T  40351810 ctctcaaccacaca 40351823  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 292
Target Start/End: Complemental strand, 46581805 - 46581764
Alignment:
Q  251 tttcaaaatcaattttaggtgaagctccaattcctagcttct 292  Q
    |||||||| |||||||||| |||||||||| |||||||||||    
T  46581805 tttcaaaagcaattttaggagaagctccaaatcctagcttct 46581764  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 204 - 311
Target Start/End: Complemental strand, 43045848 - 43045741
Alignment:
Q  204 tgtgtttggttctcctctacccgtccaccaccatcgtaagtttagcttttcaaaatcaattttaggtgaagctccaattcctagcttcttgaaattgatt 303  Q
    ||||||||||||||||| |||  || |||| || |  | ||||  ||||||| |||||||||||||||||||| ||||   |||||||||||||| ||||    
T  43045848 tgtgtttggttctcctcaacctatctaccatcaccccacgttttccttttcagaatcaattttaggtgaagctacaatctatagcttcttgaaatcgatt 43045749  T
Q  304 ctctcaac 311  Q
    || |||||    
T  43045748 ctttcaac 43045741  T

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Target: scaffold0184 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 312
Target Start/End: Original strand, 6402 - 6479
Alignment:
Q  235 catcgtaagtttagcttttcaaaatcaattttaggtgaagctccaattcctagcttcttgaaattgattctctcaacc 312  Q
    ||||||| |||| ||| | ||||||||||||| |||||||||| | || ||||||||| ||||| |||| ||| ||||    
T  6402 catcgtacgttttgctctccaaaatcaattttgggtgaagctctacttactagcttctggaaatcgattttctaaacc 6479  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 309
Target Start/End: Original strand, 40335405 - 40335466
Alignment:
Q  248 gcttttcaaaatcaattttaggtgaagctccaattcctagcttcttgaaattgattctctca 309  Q
    |||||| | |||||||||| | |||||||||| ||| ||||||||||||||  |||||||||    
T  40335405 gcttttgagaatcaattttggatgaagctccatttcatagcttcttgaaatcaattctctca 40335466  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 307
Target Start/End: Original strand, 16066404 - 16066440
Alignment:
Q  271 gaagctccaattcctagcttcttgaaattgattctct 307  Q
    |||||| |||||||||||||||||||||||| |||||    
T  16066404 gaagctgcaattcctagcttcttgaaattgagtctct 16066440  T

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