View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1460_low_25 (Length: 417)
Name: NF1460_low_25
Description: NF1460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1460_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 158; Significance: 6e-84; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 103 - 260
Target Start/End: Original strand, 27569688 - 27569845
Alignment:
| Q |
103 |
tgtgagaaaatgacacttgagagaagaaaaaggactatagtatactctatagagagatagagggtgtagggtagtatagggagaaaagtggttaatatta |
202 |
Q |
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| T |
27569688 |
tgtgagaaaatgacacttgagagaagaaaaaggactatagtatactctatagagagatagagggtgtagggtagtatagggagaaaagtggttaatatta |
27569787 |
T |
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| Q |
203 |
tatgaaaggatgtgaaattataagataaagaggggaacaaaagaaaaaggtaaataag |
260 |
Q |
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| T |
27569788 |
tatgaaaggatgtgaaattataagataaagaggggaacaaaagaaaaaggtaaataag |
27569845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 316 - 398
Target Start/End: Original strand, 27569901 - 27569983
Alignment:
| Q |
316 |
ggagtaaaaaattggaaaagtgaagnnnnnnntttgtaagctttaacgtgtgcattgtgtgtgtccttctgcaacgaattctt |
398 |
Q |
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| T |
27569901 |
ggagtaaaaaattggaaaagtgaagaaaaaaatttgtaagctttaacgtgtgcattgtgtgtgtccttctgcaacgaattctt |
27569983 |
T |
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