View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1460_low_26 (Length: 410)
Name: NF1460_low_26
Description: NF1460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1460_low_26 |
 | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 307; Significance: 1e-173; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 19 - 364
Target Start/End: Complemental strand, 38818925 - 38818579
Alignment:
| Q |
19 |
agcgaatgggattagagaccccagtagtcctagccgtaaacgatggatactaggcggttgtgcgtatcatcccgtgcaatgttgtagctaacgcgttaag |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38818925 |
agcgaatgggattagagaccccagtagtcctagccgtaaacgatggatactaggcggctgtgcgtatcatcccgtgcaatgttgtagctaacgcgttaag |
38818826 |
T |
|
| Q |
119 |
tatcccgcctggggagtacgttcgcaagaatgaaactcaaaggaattgacgggggcccgcataagcgatggagcatgtggtttaattcgatgcaaagcga |
218 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38818825 |
tatcccacctggggagtacgtccgcaagaatgaaactcaaaggaattgacgggggcccgcataagcgatggagcatgtggtttaattcgatgcaaagcga |
38818726 |
T |
|
| Q |
219 |
agaaccttaccaaggcttgacatgccgcgaatcctcttgaaaaagaggagtgccttctggaacactttgaggaatgacataatgctaatccgtgttccac |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
38818725 |
agaaccttaccaaggcttgacatgccgcgaatcctcttgaaaaagaggagtgccttcgggaacacttgtaggaatgacataatgctaatccgtgttccac |
38818626 |
T |
|
| Q |
319 |
acacacgaccaaggaagaat-aaaagaacaagaaaagtcttgcttgc |
364 |
Q |
| |
|
||||||| |||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
38818625 |
acacacggccaaggaagaataaaaaaaacaagaaaagtcttgcttgc |
38818579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 19 - 123
Target Start/End: Original strand, 17933927 - 17934031
Alignment:
| Q |
19 |
agcgaatgggattagagaccccagtagtcctagccgtaaacgatggatactaggcggttgtgcgtatcatcccgtgcaatgttgtagctaacgcgttaag |
118 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
17933927 |
agcgaatgggattcgagaccccagtagtcctagccgtaaacgatggatactaggcggctgtgcgtatcgacccgtgcaatgctgtagctaacgcgttaag |
17934026 |
T |
|
| Q |
119 |
tatcc |
123 |
Q |
| |
|
||||| |
|
|
| T |
17934027 |
tatcc |
17934031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 380 - 410
Target Start/End: Complemental strand, 38818571 - 38818541
Alignment:
| Q |
380 |
ataatagtggctcgttcgttcataaatgaac |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
38818571 |
ataatagtggctcgttcgttcataaatgaac |
38818541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 223; Significance: 1e-122; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 19 - 281
Target Start/End: Complemental strand, 13224555 - 13224293
Alignment:
| Q |
19 |
agcgaatgggattagagaccccagtagtcctagccgtaaacgatggatactaggcggttgtgcgtatcatcccgtgcaatgttgtagctaacgcgttaag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
13224555 |
agcgaatgggattagagaccccagtagtcctagccgtaaacgatggatactaggtggctgtgcgtatcgacccgtgcaatgctgtagctaacgcgttaag |
13224456 |
T |
|
| Q |
119 |
tatcccgcctggggagtacgttcgcaagaatgaaactcaaaggaattgacgggggcccgcataagcgatggagcatgtggtttaattcgatgcaaagcga |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
13224455 |
tatcccgcctggggagtacgttcgcaagaatgaaactcaaaggaattgacgggggcccgcacaagcggtggagcatgtggtttaattcgatgcaaagcga |
13224356 |
T |
|
| Q |
219 |
agaaccttaccaaggcttgacatgccgcgaatcctcttgaaaaagaggagtgccttctggaac |
281 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
13224355 |
agaaccttaccagggcttgacatgccgcgaatcctcttgaaagagaggagtgccttcgggaac |
13224293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 128 - 173
Target Start/End: Complemental strand, 3920600 - 3920555
Alignment:
| Q |
128 |
tggggagtacgttcgcaagaatgaaactcaaaggaattgacggggg |
173 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
3920600 |
tggggagtaagtttgcaagaatgaaactcaaaggaattgacagggg |
3920555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 283
Target Start/End: Original strand, 8967245 - 8967289
Alignment:
| Q |
239 |
catgccgcgaatcctcttgaaaaagaggagtgccttctggaacac |
283 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
8967245 |
catgccacgaatcctcttgaaagagaggagtgccttcgggaacac |
8967289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 19 - 281
Target Start/End: Complemental strand, 187988 - 187726
Alignment:
| Q |
19 |
agcgaatgggattagagaccccagtagtcctagccgtaaacgatggatactaggcggttgtgcgtatcatcccgtgcaatgttgtagctaacgcgttaag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
187988 |
agcgaatgggattagagaccccagtagtcctagccgtaaacgatggatactaggtggctgtgcgtatcgacccgtgcaatgctgtagctaacgcgttaag |
187889 |
T |
|
| Q |
119 |
tatcccgcctggggagtacgttcgcaagaatgaaactcaaaggaattgacgggggcccgcataagcgatggagcatgtggtttaattcgatgcaaagcga |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
187888 |
tatcccgcctggggagtacgttcgcaagaatgaaactcaaaggaattgacgggggcccgcacaagcggtggagcatgtggtttaattcgatgcaaagcga |
187789 |
T |
|
| Q |
219 |
agaaccttaccaaggcttgacatgccgcgaatcctcttgaaaaagaggagtgccttctggaac |
281 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| ||||| ||||| || ||||| |
|
|
| T |
187788 |
agaaccttaccagggcttgacatgccgcgaatcctcttgaaagagaggggtgccctcgggaac |
187726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 19 - 283
Target Start/End: Complemental strand, 15006060 - 15005796
Alignment:
| Q |
19 |
agcgaatgggattagagaccccagtagtcctagccgtaaacgatggatactaggcggttgtgcgtatcatcccgtgcaatgttgtagctaacgcgttaag |
118 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||| ||| |||||| |||||||||| ||||||| |
|
|
| T |
15006060 |
agcgaatgggattagagaccctagtagtcctagccgtaaacgatggatactaggcggctgtgtgtatcgacccatgcaatactgtagctaacacgttaag |
15005961 |
T |
|
| Q |
119 |
tatcccgcctggggagtacgttcgcaagaatgaaactcaaaggaattgacgggggcccgcataagcgatggagcatgtggtttaattcgatgcaaagcga |
218 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
15005960 |
tatccctcctggggagtacgttcgcaagaatgaaactcaaaggaattgacggggccccgcaaaagcggtggagcatgtggtttaattcgatgcaaagcga |
15005861 |
T |
|
| Q |
219 |
agaaccttaccaaggcttgacatgccgcgaatcctcttgaaaaagaggagtgccttctggaacac |
283 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
15005860 |
agaaccttaccagggcttgacatgccgtgaatcctcttgaaagagaggagtgccttcgggaacac |
15005796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 160; Significance: 4e-85; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 19 - 210
Target Start/End: Complemental strand, 14465067 - 14464876
Alignment:
| Q |
19 |
agcgaatgggattagagaccccagtagtcctagccgtaaacgatggatactaggcggttgtgcgtatcatcccgtgcaatgttgtagctaacgcgttaag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
14465067 |
agcgaatgggattagagaccccagtagtcctagccgtaaacgatggatactaggtggttgtgcgtatcgacccgtgcaatgttgtagctaacgcgttaag |
14464968 |
T |
|
| Q |
119 |
tatcccgcctggggagtacgttcgcaagaatgaaactcaaaggaattgacgggggcccgcataagcgatggagcatgtggtttaattcgatg |
210 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||| |||| |
|
|
| T |
14464967 |
tatcccgcctggggagttcgttcgcaagaatgaaactcaaaggatttgacgggggcccgcacaagcggtggagcatgtggtttaatttgatg |
14464876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 150 - 281
Target Start/End: Original strand, 489751 - 489882
Alignment:
| Q |
150 |
gaaactcaaaggaattgacgggggcccgcataagcgatggagcatgtggtttaattcgatgcaaagcgaagaaccttaccaaggcttgacatgccgcgaa |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
489751 |
gaaactcaaaggaattgacgggggcccgcacaagcggtggagcatgtggtttaattcgatgcaaagcgaagaaccttaccagggcttgacatgccgcgaa |
489850 |
T |
|
| Q |
250 |
tcctcttgaaaaagaggagtgccttctggaac |
281 |
Q |
| |
|
||||||||||| |||||||||||||| ||||| |
|
|
| T |
489851 |
tcctcttgaaagagaggagtgccttcgggaac |
489882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 19 - 148
Target Start/End: Complemental strand, 20222426 - 20222294
Alignment:
| Q |
19 |
agcgaatgggattagagaccccagtagt---cctagccgtaaacgatggatactaggcggttgtgcgtatcatcccgtgcaatgttgtagctaacgcgtt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| |||| |||||||| |||||| |||||||||| ||||||||||||| | |||||||| | |
|
|
| T |
20222426 |
agcgaatgggattagagaccccagtagtacacctagccccaaacaatggataccaggcggctgtgcgtatcgacccgtgcaatgttattgctaacgcact |
20222327 |
T |
|
| Q |
116 |
aagtatcccgcctggggagtacgttcgcaagaa |
148 |
Q |
| |
|
||| |||||||||||||||||| |||||||||| |
|
|
| T |
20222326 |
aagcatcccgcctggggagtacattcgcaagaa |
20222294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University