View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1460_low_27 (Length: 393)
Name: NF1460_low_27
Description: NF1460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1460_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 47 - 376
Target Start/End: Original strand, 51124221 - 51124537
Alignment:
| Q |
47 |
gatcctttcacccaatagtttggatatgaattgatggtccaactatcttttagcataagatatgatcacgaggtcaaatttaactttaaaaatgtatcga |
146 |
Q |
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| T |
51124221 |
gatcctttcatccaagagtttggatatgaattgatgatccaactatcttttagcataagatgtgatcacgagttcaaattcaactttaaaaatgtatcga |
51124320 |
T |
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| Q |
147 |
ttagtctaaacaattgtccattataattctattcagattgagtaattatatttgcacgaaaatggatccattcatgcttctctctcatgtttcaaatcac |
246 |
Q |
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| T |
51124321 |
ttagtctaaacaattgtccattgtaattctatacagattgagtaattatatttgcacgaaaatggatccat-------------tcatgtttcaaatcac |
51124407 |
T |
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| Q |
247 |
caacctttatccatatttatttattttattaaatttgaaaattatctcctctctaggtacgaattaatctatgaatttacgtggcacgtttgagaatgct |
346 |
Q |
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| T |
51124408 |
caacctttatccatatttattttttttattaaatttgaaaattatctcctctctaggtacgaattaatctatgaatttacgtggcacgtttgagaatgct |
51124507 |
T |
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| Q |
347 |
caactcaatccaatgccaataatgttggaa |
376 |
Q |
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| T |
51124508 |
caactcaatccaatgccaataatgttggaa |
51124537 |
T |
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