View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1460_low_31 (Length: 370)

Name: NF1460_low_31
Description: NF1460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1460_low_31
NF1460_low_31
[»] chr1 (7 HSPs)
chr1 (237-354)||(958702-958819)
chr1 (1-101)||(958463-958564)
chr1 (236-280)||(7121238-7121282)
chr1 (236-280)||(32133706-32133750)
chr1 (236-280)||(35738834-35738878)
chr1 (236-280)||(39026979-39027023)
chr1 (236-280)||(50100047-50100091)
[»] chr5 (5 HSPs)
chr5 (236-280)||(3049597-3049641)
chr5 (236-280)||(14645889-14645933)
chr5 (236-280)||(30775045-30775089)
chr5 (236-280)||(32302628-32302672)
chr5 (236-280)||(35853761-35853805)
[»] chr4 (1 HSPs)
chr4 (236-280)||(52014027-52014071)
[»] scaffold0242 (2 HSPs)
scaffold0242 (236-280)||(12910-12954)
scaffold0242 (236-280)||(21745-21789)
[»] chr7 (4 HSPs)
chr7 (236-280)||(12499431-12499475)
chr7 (236-280)||(26299627-26299671)
chr7 (236-280)||(34152217-34152261)
chr7 (236-280)||(34174863-34174907)
[»] chr6 (2 HSPs)
chr6 (236-280)||(6799259-6799303)
chr6 (236-280)||(9061966-9062010)
[»] chr3 (5 HSPs)
chr3 (236-280)||(30964384-30964428)
chr3 (236-280)||(30980196-30980240)
chr3 (236-280)||(36678936-36678980)
chr3 (236-280)||(38694671-38694715)
chr3 (236-280)||(43657491-43657535)
[»] chr2 (4 HSPs)
chr2 (236-280)||(2657032-2657076)
chr2 (236-280)||(11788847-11788891)
chr2 (236-280)||(35048857-35048901)
chr2 (236-280)||(42969260-42969304)


Alignment Details
Target: chr1 (Bit Score: 106; Significance: 6e-53; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 237 - 354
Target Start/End: Original strand, 958702 - 958819
Alignment:
Q  237 tttagtaacaatttattataactttatcatacaactacaactttctctatcccaccgttatttttccattgtacatcacttattatttattactctgtag 336  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||    
T  958702 tttagtaacaatttattataactttatcatgcaactacaactttctctatcccaccgttatttttccattgtacatcacttactatttattactctatag 958801  T
Q  337 tttttcaacttttctact 354  Q
    ||||||||||||||||||    
T  958802 tttttcaacttttctact 958819  T

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Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 958463 - 958564
Alignment:
Q  1 taggtagagtaaaatcttgtattcatgatccgaggttaggtatggataataagccg-aaatttaaacggatatgtgcactatactacccaaccccacaac 99  Q
    |||||||||||||||| ||| |||||| |||||||||||||||||||||| ||||| |||||| |||||||||||||||| |||||||||||||||||||    
T  958463 taggtagagtaaaatcatgttttcatggtccgaggttaggtatggataattagccgcaaatttgaacggatatgtgcactgtactacccaaccccacaac 958562  T
Q  100 cc 101  Q
    ||    
T  958563 cc 958564  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 280
Target Start/End: Complemental strand, 7121282 - 7121238
Alignment:
Q  236 ctttagtaacaatttattataactttatcatacaactacaacttt 280  Q
    |||||||||||||||||||| | |||| ||| |||||||||||||    
T  7121282 ctttagtaacaatttattatgattttaacatgcaactacaacttt 7121238  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 280
Target Start/End: Complemental strand, 32133750 - 32133706
Alignment:
Q  236 ctttagtaacaatttattataactttatcatacaactacaacttt 280  Q
    |||||||||||||||||||| | |||| ||| |||||||||||||    
T  32133750 ctttagtaacaatttattatgattttaacatgcaactacaacttt 32133706  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 280
Target Start/End: Original strand, 35738834 - 35738878
Alignment:
Q  236 ctttagtaacaatttattataactttatcatacaactacaacttt 280  Q
    |||||||||||||||||||| | |||| ||| |||||||||||||    
T  35738834 ctttagtaacaatttattatgattttaacatgcaactacaacttt 35738878  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 280
Target Start/End: Complemental strand, 39027023 - 39026979
Alignment:
Q  236 ctttagtaacaatttattataactttatcatacaactacaacttt 280  Q
    |||||||||||||||||||| | |||| ||| |||||||||||||    
T  39027023 ctttagtaacaatttattatgattttaacatgcaactacaacttt 39026979  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 280
Target Start/End: Complemental strand, 50100091 - 50100047
Alignment:
Q  236 ctttagtaacaatttattataactttatcatacaactacaacttt 280  Q
    |||||||||||||||||||| |||||| ||| |||||||| ||||    
T  50100091 ctttagtaacaatttattatgactttaacatgcaactacatcttt 50100047  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 280
Target Start/End: Original strand, 3049597 - 3049641
Alignment:
Q  236 ctttagtaacaatttattataactttatcatacaactacaacttt 280  Q
    ||||||||||||||||||| ||||||| ||| |||||||||||||    
T  3049597 ctttagtaacaatttattagaactttaacatgcaactacaacttt 3049641  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 280
Target Start/End: Complemental strand, 14645933 - 14645889
Alignment:
Q  236 ctttagtaacaatttattataactttatcatacaactacaacttt 280  Q
    |||||||||||||||||||| | |||| ||| |||||||||||||    
T  14645933 ctttagtaacaatttattatgattttaacatgcaactacaacttt 14645889  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 280
Target Start/End: Complemental strand, 30775089 - 30775045
Alignment:
Q  236 ctttagtaacaatttattataactttatcatacaactacaacttt 280  Q
    |||||||||||||||||||| | |||| ||| |||||||||||||    
T  30775089 ctttagtaacaatttattatgattttaacatgcaactacaacttt 30775045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 280
Target Start/End: Complemental strand, 32302672 - 32302628
Alignment:
Q  236 ctttagtaacaatttattataactttatcatacaactacaacttt 280  Q
    |||||||||||||||||||| | |||| ||| |||||||||||||    
T  32302672 ctttagtaacaatttattatgattttaacatgcaactacaacttt 32302628  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 280
Target Start/End: Complemental strand, 35853805 - 35853761
Alignment:
Q  236 ctttagtaacaatttattataactttatcatacaactacaacttt 280  Q
    |||||||||||||||||||| | |||| ||| |||||||||||||    
T  35853805 ctttagtaacaatttattatgattttaacatgcaactacaacttt 35853761  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 280
Target Start/End: Complemental strand, 52014071 - 52014027
Alignment:
Q  236 ctttagtaacaatttattataactttatcatacaactacaacttt 280  Q
    |||||||||||||||||||| |||||| ||| |||||||||||||    
T  52014071 ctttagtaacaatttattatgactttaacatgcaactacaacttt 52014027  T

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Target: scaffold0242 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 280
Target Start/End: Original strand, 12910 - 12954
Alignment:
Q  236 ctttagtaacaatttattataactttatcatacaactacaacttt 280  Q
    |||||||||||||||||||| |||||| ||| ||||| |||||||    
T  12910 ctttagtaacaatttattatgactttaacatgcaactgcaacttt 12954  T

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Target: scaffold0242; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 280
Target Start/End: Original strand, 21745 - 21789
Alignment:
Q  236 ctttagtaacaatttattataactttatcatacaactacaacttt 280  Q
    |||||||||||||||||||| |||||| ||| ||||| |||||||    
T  21745 ctttagtaacaatttattatgactttaacatgcaactgcaacttt 21789  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 280
Target Start/End: Original strand, 12499431 - 12499475
Alignment:
Q  236 ctttagtaacaatttattataactttatcatacaactacaacttt 280  Q
    |||||||||||||||||||| | |||| ||| |||||||||||||    
T  12499431 ctttagtaacaatttattatgattttaacatgcaactacaacttt 12499475  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 280
Target Start/End: Complemental strand, 26299671 - 26299627
Alignment:
Q  236 ctttagtaacaatttattataactttatcatacaactacaacttt 280  Q
    |||||||||||||||||||| | |||| ||| |||||||||||||    
T  26299671 ctttagtaacaatttattatgattttaacatgcaactacaacttt 26299627  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 280
Target Start/End: Original strand, 34152217 - 34152261
Alignment:
Q  236 ctttagtaacaatttattataactttatcatacaactacaacttt 280  Q
    |||||||||||||||||||| | |||| ||| |||||||||||||    
T  34152217 ctttagtaacaatttattatgattttaacatgcaactacaacttt 34152261  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 280
Target Start/End: Complemental strand, 34174907 - 34174863
Alignment:
Q  236 ctttagtaacaatttattataactttatcatacaactacaacttt 280  Q
    |||||||||||||||||||| | |||| ||| |||||||||||||    
T  34174907 ctttagtaacaatttattatgattttaacatgcaactacaacttt 34174863  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 280
Target Start/End: Original strand, 6799259 - 6799303
Alignment:
Q  236 ctttagtaacaatttattataactttatcatacaactacaacttt 280  Q
    |||||||||||||||||||| | |||| ||| |||||||||||||    
T  6799259 ctttagtaacaatttattatgattttaacatgcaactacaacttt 6799303  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 280
Target Start/End: Original strand, 9061966 - 9062010
Alignment:
Q  236 ctttagtaacaatttattataactttatcatacaactacaacttt 280  Q
    |||||||||||||||||||| | |||| ||| |||||||||||||    
T  9061966 ctttagtaacaatttattatgattttaacatgcaactacaacttt 9062010  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 280
Target Start/End: Original strand, 30964384 - 30964428
Alignment:
Q  236 ctttagtaacaatttattataactttatcatacaactacaacttt 280  Q
    |||||||||||||||||||| | |||| ||| |||||||||||||    
T  30964384 ctttagtaacaatttattatgattttaacatgcaactacaacttt 30964428  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 280
Target Start/End: Original strand, 30980196 - 30980240
Alignment:
Q  236 ctttagtaacaatttattataactttatcatacaactacaacttt 280  Q
    |||||||||||||||||||| | |||| ||| |||||||||||||    
T  30980196 ctttagtaacaatttattatgattttaacatgcaactacaacttt 30980240  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 280
Target Start/End: Original strand, 36678936 - 36678980
Alignment:
Q  236 ctttagtaacaatttattataactttatcatacaactacaacttt 280  Q
    |||||||||||||||| ||| | |||| |||||||||||||||||    
T  36678936 ctttagtaacaatttagtatgattttaacatacaactacaacttt 36678980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 280
Target Start/End: Original strand, 38694671 - 38694715
Alignment:
Q  236 ctttagtaacaatttattataactttatcatacaactacaacttt 280  Q
    |||||||||||||||||||| | |||| ||| |||||||||||||    
T  38694671 ctttagtaacaatttattatgattttaacatgcaactacaacttt 38694715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 280
Target Start/End: Complemental strand, 43657535 - 43657491
Alignment:
Q  236 ctttagtaacaatttattataactttatcatacaactacaacttt 280  Q
    |||||||||||||||||||| | |||| ||| |||||||||||||    
T  43657535 ctttagtaacaatttattatgattttaacatgcaactacaacttt 43657491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 280
Target Start/End: Complemental strand, 2657076 - 2657032
Alignment:
Q  236 ctttagtaacaatttattataactttatcatacaactacaacttt 280  Q
    |||||||||||||||||||| |||||| ||| ||||| |||||||    
T  2657076 ctttagtaacaatttattatgactttaacatgcaactgcaacttt 2657032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 280
Target Start/End: Complemental strand, 11788891 - 11788847
Alignment:
Q  236 ctttagtaacaatttattataactttatcatacaactacaacttt 280  Q
    |||||||||||||||||||| | |||| ||| |||||||||||||    
T  11788891 ctttagtaacaatttattatgattttaacatgcaactacaacttt 11788847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 280
Target Start/End: Complemental strand, 35048901 - 35048857
Alignment:
Q  236 ctttagtaacaatttattataactttatcatacaactacaacttt 280  Q
    |||||||||||||||||||| | |||| ||| |||||||||||||    
T  35048901 ctttagtaacaatttattatgattttaacatgcaactacaacttt 35048857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 280
Target Start/End: Complemental strand, 42969304 - 42969260
Alignment:
Q  236 ctttagtaacaatttattataactttatcatacaactacaacttt 280  Q
    |||||||||||||||||||| | |||| ||| |||||||||||||    
T  42969304 ctttagtaacaatttattatgattttaacatgcaactacaacttt 42969260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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