View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1460_low_33 (Length: 361)
Name: NF1460_low_33
Description: NF1460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1460_low_33 |
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Alignment Details
Target: chr8 (Bit Score: 319; Significance: 1e-180; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 17 - 347
Target Start/End: Original strand, 7423034 - 7423364
Alignment:
| Q |
17 |
acctctctggtataaactcatatggattgtcccaaacattaggatctcttccaattgtccaagtattgacaagaattagagtcccttttgggatatcata |
116 |
Q |
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| T |
7423034 |
acctctcaggtataaactcatatggattgtcccaaacattaggatctcttccaattgtccaagtattgacaagaattagagtcccttttgggatatcata |
7423133 |
T |
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| Q |
117 |
accatcaacattgcaatcctcactagcttctcttggcactaacaatggtgctgcaggatgaagcctcattgtttctttagcaattgcaaaaacataaggt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7423134 |
accatcaacattgcaatcctcactagcttctcttggcactaacaatggtgctgcaggatgaagcctcattgtttctttagcaattgcaaaaacataaggt |
7423233 |
T |
|
| Q |
217 |
aaattgacaatgtctttctcttcaacccatctatctcttcctattactttgtctagttcctccgtagctctcttgataatctctggctttttcacaagct |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7423234 |
aaattgacaatgtctttctcttcaacccatctatctcttcctattactttgtctagttcctccgtagctctcttgataatctctggctttttcacaagct |
7423333 |
T |
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| Q |
317 |
cggagattgcccattcaactgtaactgtaga |
347 |
Q |
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|||||||||||||||| ||||| |||||||| |
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| T |
7423334 |
cggagattgcccattctactgttactgtaga |
7423364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 17 - 332
Target Start/End: Original strand, 7429443 - 7429758
Alignment:
| Q |
17 |
acctctctggtataaactcatatggattgtcccaaacattaggatctcttccaattgtccaagtattgacaagaattagagtcccttttgggatatcata |
116 |
Q |
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|||||||||||||||| ||||||||||| |||||| || || ||||||||||||||||||||||||||||||||| | |||||||||||| |||||||| |
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| T |
7429443 |
acctctctggtataaattcatatggattatcccaactatcagaatctcttccaattgtccaagtattgacaagaatcatagtcccttttggtatatcata |
7429542 |
T |
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| Q |
117 |
accatcaacattgcaatcctcactagcttctcttggcactaacaatggtgctgcaggatgaagcctcattgtttctttagcaattgcaaaaacataaggt |
216 |
Q |
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||||||||||||||||| |||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7429543 |
accatcaacattgcaattctcagtagcttctcttggcactaacattggtgtcacaggatgaagcctcattgtttctttagcaattgcaaaaacataaggt |
7429642 |
T |
|
| Q |
217 |
aaattgacaatgtctttctcttcaacccatctatctcttcctattactttgtctagttcctccgtagctctcttgataatctctggctttttcacaagct |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||| |||||||||||||||||||||||| |||||||||||| |
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| T |
7429643 |
aaattgacaatgtctttctcttcaacccatctatctctccctattactctatctagttcctctgtagctctcttgataatctctggccttttcacaagct |
7429742 |
T |
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| Q |
317 |
cggagattgcccattc |
332 |
Q |
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| || ||||||||||| |
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| T |
7429743 |
cagaaattgcccattc |
7429758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 17 - 343
Target Start/End: Original strand, 7415375 - 7415701
Alignment:
| Q |
17 |
acctctctggtataaactcatatggattgtcccaaacattaggatctcttccaattgtccaagtattgacaagaattagagtcccttttgggatatcata |
116 |
Q |
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|
||||||| || ||||| ||||||||||| |||||||| | || ||||||| |||||||||||||||||||||||| || ||||||||| || ||||| || |
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| T |
7415375 |
acctctcaggcataaattcatatggattctcccaaacctcagaatctcttgcaattgtccaagtattgacaagaactatagtccctttgggaatatcgta |
7415474 |
T |
|
| Q |
117 |
accatcaacattgcaatcctcactagcttctcttggcactaacaatggtgctgcaggatgaagcctcattgtttctttagcaattgcaaaaacataaggt |
216 |
Q |
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||||||||| ||||||||||| |||||||||| ||||||||| |||||||| | ||||| |||||||||||||||||||||||||| ||||||||||| |
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| T |
7415475 |
accatcaactttgcaatcctctctagcttctcgtggcactaaaaatggtgccacgggatgtagcctcattgtttctttagcaattgcgtaaacataaggt |
7415574 |
T |
|
| Q |
217 |
aaattgacaatgtctttctcttcaacccatctatctcttcctattactttgtctagttcctccgtagctctcttgataatctctggctttttcacaagct |
316 |
Q |
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||||| ||||||||||||||||||||||||||||| ||||||| ||| | ||||| ||||| || ||| |||||| |||||||| ||| | || |||| |
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| T |
7415575 |
aaattcgcaatgtctttctcttcaacccatctatcttttcctatcactctatctagctcctcggttgctttcttgaagatctctggttttctaaccagct |
7415674 |
T |
|
| Q |
317 |
cggagattgcccattcaactgtaactg |
343 |
Q |
| |
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|||||||||||||||| ||||| |||| |
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| T |
7415675 |
cggagattgcccattctactgttactg |
7415701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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