View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1460_low_35 (Length: 357)

Name: NF1460_low_35
Description: NF1460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1460_low_35
NF1460_low_35
[»] chr7 (29 HSPs)
chr7 (1-249)||(47837288-47837539)
chr7 (247-357)||(24001005-24001115)
chr7 (249-357)||(42538424-42538532)
chr7 (250-355)||(35069721-35069826)
chr7 (249-357)||(5810917-5811025)
chr7 (250-357)||(5015395-5015502)
chr7 (252-355)||(10573751-10573854)
chr7 (276-355)||(32029812-32029891)
chr7 (250-357)||(42972852-42972959)
chr7 (252-357)||(43343617-43343722)
chr7 (252-357)||(44416927-44417032)
chr7 (252-355)||(44326180-44326283)
chr7 (252-357)||(4638192-4638297)
chr7 (252-357)||(16180350-16180454)
chr7 (242-355)||(45326012-45326125)
chr7 (253-357)||(26898395-26898499)
chr7 (250-357)||(9216302-9216408)
chr7 (250-357)||(41861674-41861783)
chr7 (250-357)||(5194224-5194331)
chr7 (280-355)||(38160574-38160649)
chr7 (266-355)||(27393255-27393344)
chr7 (249-349)||(31513286-31513386)
chr7 (250-357)||(24280589-24280696)
chr7 (250-357)||(43317443-43317550)
chr7 (250-338)||(40236919-40237007)
chr7 (251-349)||(31408634-31408732)
chr7 (250-349)||(33384870-33384970)
chr7 (249-317)||(39998407-39998475)
chr7 (250-349)||(27535232-27535331)
[»] chr1 (25 HSPs)
chr1 (250-357)||(750298-750405)
chr1 (249-357)||(43571079-43571187)
chr1 (250-357)||(5489776-5489883)
chr1 (250-357)||(48498955-48499062)
chr1 (250-355)||(37814778-37814883)
chr1 (250-357)||(23989516-23989624)
chr1 (250-357)||(24769492-24769599)
chr1 (252-357)||(4401329-4401435)
chr1 (252-357)||(7447828-7447932)
chr1 (248-349)||(48119626-48119727)
chr1 (249-355)||(50448255-50448361)
chr1 (249-349)||(35003293-35003393)
chr1 (252-355)||(2497557-2497660)
chr1 (250-349)||(44112677-44112776)
chr1 (248-349)||(38335916-38336017)
chr1 (250-349)||(41065153-41065252)
chr1 (242-349)||(45639733-45639840)
chr1 (250-349)||(46168383-46168482)
chr1 (292-357)||(4888085-4888150)
chr1 (250-343)||(38113202-38113295)
chr1 (250-349)||(45427746-45427845)
chr1 (247-349)||(35000114-35000216)
chr1 (250-349)||(45705825-45705924)
chr1 (288-331)||(26585500-26585543)
chr1 (250-307)||(14427347-14427404)
[»] chr5 (14 HSPs)
chr5 (244-357)||(2614642-2614755)
chr5 (248-357)||(22512303-22512412)
chr5 (250-357)||(18033982-18034089)
chr5 (250-355)||(7617133-7617238)
chr5 (244-357)||(33801463-33801576)
chr5 (250-357)||(41334656-41334763)
chr5 (252-355)||(5256997-5257100)
chr5 (250-355)||(38470579-38470684)
chr5 (245-322)||(33855071-33855148)
chr5 (239-349)||(32473395-32473505)
chr5 (297-357)||(39122426-39122486)
chr5 (250-349)||(17208074-17208173)
chr5 (252-308)||(25915029-25915085)
chr5 (250-349)||(30622720-30622818)
[»] chr8 (28 HSPs)
chr8 (247-357)||(11582763-11582873)
chr8 (248-357)||(29705360-29705469)
chr8 (250-357)||(36743476-36743583)
chr8 (252-355)||(42295197-42295300)
chr8 (250-357)||(2165956-2166063)
chr8 (250-357)||(30660735-30660842)
chr8 (250-357)||(42197428-42197535)
chr8 (250-355)||(5754903-5755008)
chr8 (250-357)||(2546996-2547103)
chr8 (252-355)||(29800945-29801048)
chr8 (251-357)||(45397317-45397423)
chr8 (252-357)||(30912555-30912660)
chr8 (249-357)||(1375541-1375649)
chr8 (252-355)||(26125637-26125740)
chr8 (252-355)||(20148762-20148865)
chr8 (258-357)||(31384672-31384771)
chr8 (252-346)||(42699259-42699353)
chr8 (250-349)||(35181516-35181615)
chr8 (250-357)||(40528627-40528735)
chr8 (250-349)||(34304788-34304887)
chr8 (250-349)||(18066719-18066818)
chr8 (292-355)||(9241594-9241657)
chr8 (285-355)||(3743806-3743876)
chr8 (250-343)||(16603633-16603726)
chr8 (252-349)||(33629994-33630091)
chr8 (251-344)||(16358839-16358933)
chr8 (292-349)||(10678153-10678210)
chr8 (248-285)||(28977144-28977181)
[»] chr2 (32 HSPs)
chr2 (248-357)||(1750412-1750521)
chr2 (251-357)||(19047158-19047264)
chr2 (250-355)||(12302248-12302353)
chr2 (248-352)||(16096745-16096849)
chr2 (250-357)||(30838632-30838739)
chr2 (252-355)||(43490396-43490499)
chr2 (250-357)||(4764719-4764826)
chr2 (240-355)||(43335758-43335873)
chr2 (251-357)||(34817769-34817875)
chr2 (248-355)||(13780730-13780837)
chr2 (250-349)||(43114557-43114656)
chr2 (252-329)||(33229303-33229381)
chr2 (247-349)||(12415461-12415563)
chr2 (247-349)||(12427521-12427623)
chr2 (252-349)||(11825655-11825752)
chr2 (252-349)||(41281975-41282072)
chr2 (250-349)||(16803968-16804067)
chr2 (250-349)||(16843250-16843349)
chr2 (252-357)||(8896576-8896681)
chr2 (250-343)||(18491705-18491798)
chr2 (292-357)||(42849852-42849916)
chr2 (250-349)||(966835-966934)
chr2 (250-349)||(34895742-34895841)
chr2 (250-357)||(42026767-42026876)
chr2 (252-332)||(6518487-6518566)
chr2 (288-349)||(4451951-4452012)
chr2 (246-339)||(7070412-7070505)
chr2 (288-357)||(39149285-39149354)
chr2 (252-332)||(4299438-4299518)
chr2 (250-332)||(14285676-14285758)
chr2 (245-273)||(42849923-42849951)
chr2 (245-273)||(42849962-42849990)
[»] scaffold0119 (1 HSPs)
scaffold0119 (250-357)||(685-792)
[»] chr6 (18 HSPs)
chr6 (250-357)||(9698326-9698433)
chr6 (250-357)||(26670002-26670109)
chr6 (250-357)||(26466799-26466906)
chr6 (248-357)||(13743214-13743323)
chr6 (248-357)||(13748714-13748823)
chr6 (250-357)||(21279929-21280036)
chr6 (250-355)||(7273330-7273435)
chr6 (252-357)||(24203980-24204085)
chr6 (249-355)||(30014342-30014448)
chr6 (250-357)||(7292747-7292854)
chr6 (252-355)||(30735984-30736087)
chr6 (250-355)||(3213400-3213505)
chr6 (250-355)||(7367549-7367654)
chr6 (250-355)||(21293672-21293777)
chr6 (252-349)||(27441544-27441641)
chr6 (245-349)||(33253908-33254012)
chr6 (250-349)||(33242403-33242502)
chr6 (250-327)||(31109245-31109322)
[»] chr3 (26 HSPs)
chr3 (250-357)||(40808865-40808972)
chr3 (250-357)||(46941053-46941160)
chr3 (247-357)||(42100685-42100795)
chr3 (251-357)||(54237097-54237203)
chr3 (250-357)||(25413681-25413788)
chr3 (250-357)||(54246141-54246248)
chr3 (251-357)||(42394412-42394518)
chr3 (250-355)||(24688397-24688502)
chr3 (248-355)||(45126923-45127030)
chr3 (249-357)||(36150129-36150237)
chr3 (250-357)||(47191019-47191125)
chr3 (251-357)||(40480750-40480856)
chr3 (252-357)||(53581851-53581956)
chr3 (252-357)||(27748565-27748670)
chr3 (250-355)||(53273679-53273784)
chr3 (250-349)||(4190266-4190365)
chr3 (250-349)||(9434124-9434223)
chr3 (250-349)||(10457893-10457992)
chr3 (285-357)||(51249343-51249415)
chr3 (250-338)||(25996268-25996356)
chr3 (292-355)||(52629870-52629933)
chr3 (254-352)||(29558232-29558330)
chr3 (250-349)||(52627978-52628077)
chr3 (242-332)||(1078219-1078308)
chr3 (248-349)||(34791827-34791928)
chr3 (280-357)||(11064715-11064792)
[»] scaffold0038 (1 HSPs)
scaffold0038 (251-357)||(112656-112762)
[»] chr4 (38 HSPs)
chr4 (250-355)||(1771261-1771366)
chr4 (250-357)||(33703141-33703248)
chr4 (246-357)||(35017729-35017839)
chr4 (245-355)||(27550304-27550414)
chr4 (252-357)||(43949794-43949900)
chr4 (250-355)||(25051693-25051798)
chr4 (246-355)||(27316708-27316817)
chr4 (252-355)||(27893837-27893940)
chr4 (250-357)||(28982815-28982922)
chr4 (252-357)||(39631102-39631208)
chr4 (250-355)||(27864564-27864669)
chr4 (252-357)||(43514679-43514784)
chr4 (250-355)||(55966341-55966446)
chr4 (249-357)||(12496955-12497063)
chr4 (250-357)||(28988473-28988580)
chr4 (250-355)||(23035980-23036085)
chr4 (253-355)||(23204773-23204875)
chr4 (248-357)||(45490306-45490415)
chr4 (247-349)||(17619153-17619255)
chr4 (252-355)||(31680904-31681007)
chr4 (250-357)||(41847971-41848078)
chr4 (250-355)||(48463445-48463550)
chr4 (249-349)||(55272377-55272477)
chr4 (250-349)||(711960-712059)
chr4 (251-357)||(41878407-41878513)
chr4 (252-357)||(43735744-43735849)
chr4 (250-357)||(21687006-21687113)
chr4 (292-357)||(51512258-51512323)
chr4 (252-332)||(3756264-3756344)
chr4 (250-349)||(32728357-32728456)
chr4 (250-349)||(48435580-48435679)
chr4 (252-338)||(35037007-35037093)
chr4 (252-357)||(41327536-41327641)
chr4 (250-330)||(960890-960970)
chr4 (303-355)||(46412464-46412516)
chr4 (283-349)||(19879987-19880053)
chr4 (250-330)||(49229684-49229764)
chr4 (250-332)||(46827724-46827806)
[»] scaffold0187 (2 HSPs)
scaffold0187 (250-357)||(14181-14288)
scaffold0187 (250-357)||(24509-24616)
[»] scaffold0385 (1 HSPs)
scaffold0385 (250-354)||(11251-11355)
[»] scaffold0157 (1 HSPs)
scaffold0157 (249-357)||(23414-23522)
[»] scaffold0003 (1 HSPs)
scaffold0003 (252-349)||(45720-45817)
[»] scaffold0100 (1 HSPs)
scaffold0100 (249-349)||(35457-35557)


Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-115; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 47837288 - 47837539
Alignment:
Q  1 ttattaggtcgttgagtattattgatcaaaggagagacaaaaatatgtaaataactaacgagtcaaatataatatataattggtcaaatctcgggttagg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  47837288 ttattaggtcgttgagtattattgatcaaaggagagacaaaaatatataaataactaacgagtcaaatataatatataattggtcaaatc--gggttagg 47837385  T
Q  101 tatatatcagttgaatgatattgtgaaatacaccgcaatacaaaattgcctacatagatagatagatagatcaccccctattctatgctatagctgc--- 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||       
T  47837386 tatatatcagttgaatgatattgtgaaatacaccgcaatacaaaattggctagatagatagatagatagatcaccccctattctatgctatagctgcctg 47837485  T
Q  198 --ctgtacctggctacaaatggacatgtctaaagtaatttgatgtatattatat 249  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47837486 tactgtacctggctacaaatggacatgtctaaagtaatttgatgtatattatat 47837539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 247 - 357
Target Start/End: Complemental strand, 24001115 - 24001005
Alignment:
Q  247 tatggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttat 346  Q
    |||||||||||||||||||||||||||  |||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||    
T  24001115 tatggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacactttat 24001016  T
Q  347 cttctatttgt 357  Q
    |||||||||||    
T  24001015 cttctatttgt 24001005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 249 - 357
Target Start/End: Complemental strand, 42538532 - 42538424
Alignment:
Q  249 tggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatct 348  Q
    |||||||||||||||||||||||||  |||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  42538532 tggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacactttatct 42538433  T
Q  349 tctatttgt 357  Q
    |||||||||    
T  42538432 tctatttgt 42538424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 250 - 355
Target Start/End: Original strand, 35069721 - 35069826
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    |||||||||||||||||||| |||  |||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  35069721 ggaaaatgttacatgaacactctttattcctacacctcattgtacacctcatgtattagggatattttggtaagttcatctcacaaccacactttatctt 35069820  T
Q  350 ctattt 355  Q
    ||||||    
T  35069821 ctattt 35069826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 249 - 357
Target Start/End: Complemental strand, 5811025 - 5810917
Alignment:
Q  249 tggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatct 348  Q
    ||||||||||||||||| |||||||  ||||||||||||||||||||||| || |||||||||||||||| ||| ||||||||| |||||||||||||||    
T  5811025 tggaaaatgttacatgaccaccctttattcctacaccccattgtacaccctatatattagggatattttgataagttcatctcacaaccacactttatct 5810926  T
Q  349 tctatttgt 357  Q
    |||||||||    
T  5810925 tctatttgt 5810917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 250 - 357
Target Start/End: Original strand, 5015395 - 5015502
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    |||||||||||||||||||| |||  || |||||| |||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  5015395 ggaaaatgttacatgaacactctttatttctacactccattgtacacctcatgtattagggatattttggtaagttcatctcacaaccacactttatctt 5015494  T
Q  350 ctatttgt 357  Q
    ||||||||    
T  5015495 ctatttgt 5015502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 252 - 355
Target Start/End: Original strand, 10573751 - 10573854
Alignment:
Q  252 aaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatcttct 351  Q
    |||||||||||| |||||||||  ||| |||| || |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  10573751 aaaatgttacataaacaccctttattcatacatcctattgtacaccccatgtattaggaatattttggtaaattcatctcacaaccacactttatcttct 10573850  T
Q  352 attt 355  Q
    ||||    
T  10573851 attt 10573854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 276 - 355
Target Start/End: Complemental strand, 32029891 - 32029812
Alignment:
Q  276 ttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatcttctattt 355  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  32029891 ttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctaacaaccacactttatcttctattt 32029812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 250 - 357
Target Start/End: Original strand, 42972852 - 42972959
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    |||||||||||| |||||| ||||  ||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||| ||||||| ||||||||    
T  42972852 ggaaaatgttacctgaacatcctttattcctacactccattgtacacctcatgtattagggatattttggtaagttcatctcacaaccacattttatctt 42972951  T
Q  350 ctatttgt 357  Q
    ||||||||    
T  42972952 ctatttgt 42972959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 252 - 357
Target Start/End: Complemental strand, 43343722 - 43343617
Alignment:
Q  252 aaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatcttct 351  Q
    ||||||||||||||||| | ||  || |||||||| ||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||    
T  43343722 aaaatgttacatgaacatcatttatttctacaccctattgtacaccccatgtattagggatattttgataagttcatctcacaaccacactttatcttct 43343623  T
Q  352 atttgt 357  Q
    ||||||    
T  43343622 atttgt 43343617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 252 - 357
Target Start/End: Complemental strand, 44417032 - 44416927
Alignment:
Q  252 aaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatcttct 351  Q
    ||||||||||||||||| | ||  || |||||||| ||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||    
T  44417032 aaaatgttacatgaacatcatttatttctacaccctattgtacaccccatgtattagggatattttgataagttcatctcacaaccacactttatcttct 44416933  T
Q  352 atttgt 357  Q
    ||||||    
T  44416932 atttgt 44416927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 252 - 355
Target Start/End: Original strand, 44326180 - 44326283
Alignment:
Q  252 aaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatcttct 351  Q
    |||||||||||| |||||||||  ||| |||| ||||||||||||| ||| |||||||||||||||||||| ||||||||| |||||||||||||| |||    
T  44326180 aaaatgttacataaacaccctttattcatacatcccattgtacacctcatatattagggatattttggtaagttcatctcacaaccacactttatcatct 44326279  T
Q  352 attt 355  Q
    ||||    
T  44326280 attt 44326283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 252 - 357
Target Start/End: Complemental strand, 4638297 - 4638192
Alignment:
Q  252 aaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatcttct 351  Q
    ||||||||||||||||||| ||  ||| ||||| | |||||||||||||| ||||| |||||||||||||| ||||||||| ||||| ||||||||||||    
T  4638297 aaaatgttacatgaacaccttttattcatacactcaattgtacaccccatatattatggatattttggtaagttcatctcacaaccatactttatcttct 4638198  T
Q  352 atttgt 357  Q
    ||||||    
T  4638197 atttgt 4638192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 252 - 357
Target Start/End: Complemental strand, 16180454 - 16180350
Alignment:
Q  252 aaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatcttct 351  Q
    |||||||||||| |||||| ||  ||||||||||| ||||||||||||| ||||||   |||||||||||||||||||||| ||||||||||||||||||    
T  16180454 aaaatgttacatcaacaccatttattcctacaccc-attgtacaccccacgtattataaatattttggtaaattcatctcacaaccacactttatcttct 16180356  T
Q  352 atttgt 357  Q
    ||||||    
T  16180355 atttgt 16180350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 242 - 355
Target Start/End: Original strand, 45326012 - 45326125
Alignment:
Q  242 tattatatggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacac 341  Q
    ||||| ||||||| |||||||| |||||| ||  ||| |||| | ||||||||||||||| |||||||||||||||||||| ||||||||| || |||||    
T  45326012 tattaaatggaaagtgttacataaacaccttttattcatacatcacattgtacaccccatatattagggatattttggtaagttcatctcacaatcacac 45326111  T
Q  342 tttatcttctattt 355  Q
    ||||||||||||||    
T  45326112 tttatcttctattt 45326125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 253 - 357
Target Start/End: Complemental strand, 26898499 - 26898395
Alignment:
Q  253 aaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatcttcta 352  Q
    |||||||||||||||||| ||  ||| ||||||| ||||||||  ||||||||||||||||||||||||| ||||||| | ||||||||||||| |||||    
T  26898499 aaatgttacatgaacaccttttattcatacacccaattgtacattccatgtattagggatattttggtaagttcatcttacaaccacactttatattcta 26898400  T
Q  353 tttgt 357  Q
    |||||    
T  26898399 tttgt 26898395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 250 - 357
Target Start/End: Original strand, 9216302 - 9216408
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    ||||||||||||||||||||||||  |||||| | || ||||||||||| ||| ||||| ||||||||||||| ||||||||| ||||||| ||||||||    
T  9216302 ggaaaatgttacatgaacaccctttattcctatatcctattgtacaccc-atgcattagagatattttggtaagttcatctcacaaccacattttatctt 9216400  T
Q  350 ctatttgt 357  Q
    ||||||||    
T  9216401 ctatttgt 9216408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 250 - 357
Target Start/End: Original strand, 41861674 - 41861783
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtatta--gggatattttggtaaattcatctcaaaaccacactttatc 347  Q
    ||||||||||||||||||||||||  ||| ||||||| ||| ||||||| ||||||||  | ||||||||||||| || |||||| ||||||||||||||    
T  41861674 ggaaaatgttacatgaacaccctttattcatacacccaattatacaccctatgtattatagagatattttggtaagtttatctcacaaccacactttatc 41861773  T
Q  348 ttctatttgt 357  Q
    ||||||||||    
T  41861774 ttctatttgt 41861783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 250 - 357
Target Start/End: Complemental strand, 5194331 - 5194224
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    ||||||||||||||||||||| ||  ||| |||||| |||||||||||| |||| ||| |||||||||| ||||||||||||| || |||||||  ||||    
T  5194331 ggaaaatgttacatgaacaccatttattcatacacctcattgtacaccctatgttttaaggatattttgataaattcatctcacaatcacacttactctt 5194232  T
Q  350 ctatttgt 357  Q
    ||||||||    
T  5194231 ctatttgt 5194224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 280 - 355
Target Start/End: Complemental strand, 38160649 - 38160574
Alignment:
Q  280 tacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatcttctattt 355  Q
    ||||| |||||||||||||||||||||||||||||||| |||| ||||||||| ||| ||||||||||||||||||    
T  38160649 tacactccattgtacaccccatgtattagggatattttagtaacttcatctcacaactacactttatcttctattt 38160574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 266 - 355
Target Start/End: Complemental strand, 27393344 - 27393255
Alignment:
Q  266 acacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatcttctattt 355  Q
    ||||||||  |||||||| || ||||||||| | |||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||    
T  27393344 acaccctttattcctacatcctattgtacactctatgtattagggatatttttgtaagttcatctcacaaccacactttatcttctattt 27393255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 249 - 349
Target Start/End: Original strand, 31513286 - 31513386
Alignment:
Q  249 tggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatct 348  Q
    ||||||||||||||||||||| |||   || ||||||| |||||| |||||||| |||| |||||||||||||||||||||||| ||||| ||||| |||    
T  31513286 tggaaaatgttacatgaacactctttaatcatacaccctattgtataccccatgcattaaggatattttggtaaattcatctcacaaccatactttctct 31513385  T
Q  349 t 349  Q
    |    
T  31513386 t 31513386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 250 - 357
Target Start/End: Complemental strand, 24280696 - 24280589
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    |||||||||||| |||||||||||  ||| ||||||| ||| |||| |||||| | |||  |||||||||||||||||||||| || |||||||| ||||    
T  24280696 ggaaaatgttacgtgaacaccctttattcatacaccctattctacatcccatgcactagaaatattttggtaaattcatctcacaatcacactttctctt 24280597  T
Q  350 ctatttgt 357  Q
    ||||||||    
T  24280596 ctatttgt 24280589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 250 - 357
Target Start/End: Original strand, 43317443 - 43317550
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    ||||||||||||||||||||| ||  ||| |||||| ||||||||| || |||  |||||||||||||| ||||||||||||| || |||||||  ||||    
T  43317443 ggaaaatgttacatgaacaccatttattcatacacctcattgtacatcctatgctttagggatattttgataaattcatctcacaatcacacttactctt 43317542  T
Q  350 ctatttgt 357  Q
    ||||||||    
T  43317543 ctatttgt 43317550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 250 - 338
Target Start/End: Original strand, 40236919 - 40237007
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaacca 338  Q
    ||||||||||||||||||||||||   || |||| || ||||||||||||||| |||||||| |||||||||| ||||||||| |||||    
T  40236919 ggaaaatgttacatgaacaccctttaatcatacatcctattgtacaccccatgcattagggacattttggtaatttcatctcacaacca 40237007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 251 - 349
Target Start/End: Complemental strand, 31408732 - 31408634
Alignment:
Q  251 gaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    |||||||||||||||||||||||   || ||||| | |||||||| |||||| |||| |||||||||||||||||||| ||| ||||| ||||| ||||    
T  31408732 gaaaatgttacatgaacaccctttaatcatacactctattgtacatcccatgcattaaggatattttggtaaattcatttcacaaccatactttctctt 31408634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 250 - 349
Target Start/End: Original strand, 33384870 - 33384970
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacacccc-attgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatct 348  Q
    ||||||||||||||||||| | ||   || |||||||| |||||| || ||||| |||||||| |||||||||||||||||||| || || ||||| |||    
T  33384870 ggaaaatgttacatgaacatcatttaatcatacacccctattgtatactccatgcattagggacattttggtaaattcatctcacaaacatactttctct 33384969  T
Q  349 t 349  Q
    |    
T  33384970 t 33384970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 249 - 317
Target Start/End: Original strand, 39998407 - 39998475
Alignment:
Q  249 tggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatatttt 317  Q
    |||||||||||||||||||||  ||   || |||| || ||||||||||||||||||||||||||||||    
T  39998407 tggaaaatgttacatgaacacattttaatcatacatcctattgtacaccccatgtattagggatatttt 39998475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 250 - 349
Target Start/End: Complemental strand, 27535331 - 27535232
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    ||||||||||||||||||||||||   || ||||| | ||||||||| |||||| |||  || |||||||||| ||||||||| ||| | ||||| ||||    
T  27535331 ggaaaatgttacatgaacaccctttaatcatacactctattgtacactccatgtgttaaagacattttggtaatttcatctcacaactatactttctctt 27535232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 96; Significance: 5e-47; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 250 - 357
Target Start/End: Complemental strand, 750405 - 750298
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  750405 ggaaaatgttacgtgaacacccttatttcctacaccccattgtacaccccatgtatcagggatattttgataaattcatctcaaaaccacactttatctt 750306  T
Q  350 ctatttgt 357  Q
    ||||||||    
T  750305 ctatttgt 750298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 249 - 357
Target Start/End: Complemental strand, 43571187 - 43571079
Alignment:
Q  249 tggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatct 348  Q
    |||||||||||||||||||||||||  |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  43571187 tggaaaatgttacatgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttggtaagttcatctcacaaccacactttatct 43571088  T
Q  349 tctatttgt 357  Q
    |||||||||    
T  43571087 tctatttgt 43571079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 250 - 357
Target Start/End: Original strand, 5489776 - 5489883
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    ||||||||||||||||||||||||  |||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  5489776 ggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacactttatctt 5489875  T
Q  350 ctatttgt 357  Q
    ||||||||    
T  5489876 ctatttgt 5489883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 250 - 357
Target Start/End: Complemental strand, 48499062 - 48498955
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    |||||||||||||||||||| |||  || |||||| |||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  48499062 ggaaaatgttacatgaacactctttatttctacactccattgtacacctcatgtattagggatattttggtaagttcatctcacaaccacactttatctt 48498963  T
Q  350 ctatttgt 357  Q
    ||||||||    
T  48498962 ctatttgt 48498955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 250 - 355
Target Start/End: Original strand, 37814778 - 37814883
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    |||||||||||||| |||||||||  ||| |||| | ||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||    
T  37814778 ggaaaatgttacataaacaccctttattcatacatctcattgtacaccccatgtattaaggatattttggtaaattcatttcacaaccacactttatctt 37814877  T
Q  350 ctattt 355  Q
    ||||||    
T  37814878 ctattt 37814883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 250 - 357
Target Start/End: Complemental strand, 23989624 - 23989516
Alignment:
Q  250 ggaaaatgttacatgaacacccttat-ttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatct 348  Q
    |||||||||||||||||||||||| | ||| ||||| | |||||| |||| |||||||||||||||||||||||||| |||||| |||||||||||||||    
T  23989624 ggaaaatgttacatgaacacccttttattcatacactcaattgtataccctatgtattagggatattttggtaaatttatctcacaaccacactttatct 23989525  T
Q  349 tctatttgt 357  Q
    |||||||||    
T  23989524 tctatttgt 23989516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 250 - 357
Target Start/End: Complemental strand, 24769599 - 24769492
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    |||||||||| |||||||||| ||  || |||||| ||||||||||||||||||||||||||||||||||||| ||| | ||| ||||||||||||||||    
T  24769599 ggaaaatgtttcatgaacaccttttatttctacactccattgtacaccccatgtattagggatattttggtaagttcttatcacaaccacactttatctt 24769500  T
Q  350 ctatttgt 357  Q
    ||||||||    
T  24769499 ctatttgt 24769492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 252 - 357
Target Start/End: Original strand, 4401329 - 4401435
Alignment:
Q  252 aaaatgttacatgaacacccttat-ttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatcttc 350  Q
    |||||| ||||||||||| ||| | |||||||||  |||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||    
T  4401329 aaaatgatacatgaacactcttttattcctacacttcattgtacaccccatgtattagagatattttggtaagttcatctcacaaccacactttatcttc 4401428  T
Q  351 tatttgt 357  Q
    |||||||    
T  4401429 tatttgt 4401435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 252 - 357
Target Start/End: Original strand, 7447828 - 7447932
Alignment:
Q  252 aaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatcttct 351  Q
    ||||||||||||||||| ||||  |||||||| |||||||||||||| ||||||||  ||||||||| ||| ||||||||| ||||||||||||||||||    
T  7447828 aaaatgttacatgaacatcctttattcctacatcccattgtacaccc-atgtattacagatattttgataagttcatctcacaaccacactttatcttct 7447926  T
Q  352 atttgt 357  Q
    ||||||    
T  7447927 atttgt 7447932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 248 - 349
Target Start/End: Original strand, 48119626 - 48119727
Alignment:
Q  248 atggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatc 347  Q
    ||||||||||||||||||||||||||   || ||||||| ||||||||||||||| |||| |||||||||||||||||||||||| ||||| ||||| ||    
T  48119626 atggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattaaggatattttggtaaattcatctcacaaccatactttctc 48119725  T
Q  348 tt 349  Q
    ||    
T  48119726 tt 48119727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 249 - 355
Target Start/End: Complemental strand, 50448361 - 50448255
Alignment:
Q  249 tggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatct 348  Q
    ||||||||||||||||||||| |||  || |||||| ||||||||||||  |||||||||||||||||| |||| ||||||| | ||||||| |||||||    
T  50448361 tggaaaatgttacatgaacactctttatttctacactccattgtacaccttatgtattagggatatttttgtaagttcatcttacaaccacattttatct 50448262  T
Q  349 tctattt 355  Q
    |||||||    
T  50448261 tctattt 50448255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 249 - 349
Target Start/End: Original strand, 35003293 - 35003393
Alignment:
Q  249 tggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatct 348  Q
    |||||||||||||||||||||||||   || ||||||| ||||||||||||||  |||| |||||||||||||||||||||||| ||||| ||||| |||    
T  35003293 tggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatacattaaggatattttggtaaattcatctcacaaccatactttctct 35003392  T
Q  349 t 349  Q
    |    
T  35003393 t 35003393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 252 - 355
Target Start/End: Complemental strand, 2497660 - 2497557
Alignment:
Q  252 aaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatcttct 351  Q
    |||||||||||| |||||| ||  ||| ||||  |||||||||||||||| ||||| |||||||||||||| ||||||||| |||||||||||||| |||    
T  2497660 aaaatgttacataaacaccatttattcatacattccattgtacaccccatatattaaggatattttggtaagttcatctcacaaccacactttatcatct 2497561  T
Q  352 attt 355  Q
    ||||    
T  2497560 attt 2497557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 250 - 349
Target Start/End: Original strand, 44112677 - 44112776
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    ||||||||||||||||||||||||   || ||||||| ||||||||||||||| |||||||| |||||||||| ||||||||| ||||| ||||| ||||    
T  44112677 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctcacaaccatactttctctt 44112776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 248 - 349
Target Start/End: Original strand, 38335916 - 38336017
Alignment:
Q  248 atggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatc 347  Q
    ||||||||||||||||||||||||||   || ||||||  |||||||| |||||| |||| |||||||||||||||||||||||| ||||| ||||| ||    
T  38335916 atggaaaatgttacatgaacaccctttaatcatacaccttattgtacatcccatgcattaaggatattttggtaaattcatctcacaaccatactttctc 38336015  T
Q  348 tt 349  Q
    ||    
T  38336016 tt 38336017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 250 - 349
Target Start/End: Original strand, 41065153 - 41065252
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    ||||||||||||||||||||||||   || |||||||  |||||||||||||| |||||||  |||||||||| ||||||||| ||||| ||||| ||||    
T  41065153 ggaaaatgttacatgaacaccctttaatcatacaccctgttgtacaccccatgcattaggggcattttggtaatttcatctcacaaccatactttctctt 41065252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 242 - 349
Target Start/End: Complemental strand, 45639840 - 45639733
Alignment:
Q  242 tattatatggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacac 341  Q
    ||||||| |||||||||||||||||||| |||   || |||| || ||||||||||||||  |||| |||||||||||||||||||||||| || || ||    
T  45639840 tattataaggaaaatgttacatgaacactctttaatcatacatcctattgtacaccccatacattaaggatattttggtaaattcatctcacaatcatac 45639741  T
Q  342 tttatctt 349  Q
    ||| ||||    
T  45639740 tttctctt 45639733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 250 - 349
Target Start/End: Original strand, 46168383 - 46168482
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    ||||||||||||||||||||||||   || || | || ||||||||||| ||| |||| |||||||||||||||||||||||| ||||| ||||| ||||    
T  46168383 ggaaaatgttacatgaacaccctttaatcatatatcctattgtacacccaatgcattaaggatattttggtaaattcatctcacaaccatactttctctt 46168482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 292 - 357
Target Start/End: Original strand, 4888085 - 4888150
Alignment:
Q  292 tacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatcttctatttgt 357  Q
    |||| |||||||||||||||||||||||||| || |||||| ||||||||||||| ||||||||||    
T  4888085 tacatcccatgtattagggatattttggtaagtttatctcacaaccacactttattttctatttgt 4888150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 250 - 343
Target Start/End: Complemental strand, 38113295 - 38113202
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactt 343  Q
    ||||||||||| ||||||||||||   || ||||||| ||||||||||||||| ||||  || |||||||||||||||||||| ||||| ||||    
T  38113295 ggaaaatgttatatgaacaccctttaatcatacaccctattgtacaccccatgcattaatgacattttggtaaattcatctcacaaccatactt 38113202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 250 - 349
Target Start/End: Complemental strand, 45427845 - 45427746
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    ||||||||||||||||| ||| ||   || ||||||| ||||||||| ||||| |||||||| |||||||||| ||||||||| ||||| ||||| ||||    
T  45427845 ggaaaatgttacatgaataccttttaatcatacaccctattgtacactccatgcattagggacattttggtaatttcatctcacaaccatactttctctt 45427746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 247 - 349
Target Start/End: Complemental strand, 35000216 - 35000114
Alignment:
Q  247 tatggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttat 346  Q
    |||||||||||||||||||||||| ||   || ||||| | |||||| ||  ||||||||||||| |||||| |||||| |||||| ||||| ||||| |    
T  35000216 tatggaaaatgttacatgaacaccttttaatcatacactctattgtatacttcatgtattagggacattttgataaatttatctcacaaccatactttct 35000117  T
Q  347 ctt 349  Q
    |||    
T  35000116 ctt 35000114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 250 - 349
Target Start/End: Original strand, 45705825 - 45705924
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    ||||||||||| ||||||||||||   || ||||  | ||||||||| ||||| |||| ||| |||||| ||||||||||||| ||||| ||||| ||||    
T  45705825 ggaaaatgttatatgaacaccctttaatcatacattctattgtacactccatgcattatggacattttgataaattcatctcacaaccatactttctctt 45705924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 288 - 331
Target Start/End: Original strand, 26585500 - 26585543
Alignment:
Q  288 attgtacaccccatgtattagggatattttggtaaattcatctc 331  Q
    ||||||||||||||| |||| ||||||||| |||||||||||||    
T  26585500 attgtacaccccatgcattaaggatattttagtaaattcatctc 26585543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 307
Target Start/End: Original strand, 14427347 - 14427404
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtatta 307  Q
    ||||||||||||||||||||||||   || ||||||| |||||||||| |||| ||||    
T  14427347 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacacctcatgcatta 14427404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 90; Significance: 2e-43; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 244 - 357
Target Start/End: Complemental strand, 2614755 - 2614642
Alignment:
Q  244 ttatatggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactt 343  Q
    ||||||||||||||||||||||||||||||  |||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||    
T  2614755 ttatatggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacactt 2614656  T
Q  344 tatcttctatttgt 357  Q
    ||||||||||||||    
T  2614655 tatcttctatttgt 2614642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 248 - 357
Target Start/End: Original strand, 22512303 - 22512412
Alignment:
Q  248 atggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatc 347  Q
    ||||||||||||||||||||||||||  ||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  22512303 atggaaaatgttacatgaacaccctttattcctacactccattgtacactccatgtattagggatattttggtaagttcatctcacaaccacactttatc 22512402  T
Q  348 ttctatttgt 357  Q
    ||||||||||    
T  22512403 ttctatttgt 22512412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 250 - 357
Target Start/End: Original strand, 18033982 - 18034089
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    ||||||||||||||||||||||||  ||||||||| ||||||||||||| |||||||||||||||||| |||| ||||||||| ||||||||||||||||    
T  18033982 ggaaaatgttacatgaacaccctttattcctacactccattgtacaccctatgtattagggatatttttgtaagttcatctcacaaccacactttatctt 18034081  T
Q  350 ctatttgt 357  Q
    ||||||||    
T  18034082 ctatttgt 18034089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 250 - 355
Target Start/End: Original strand, 7617133 - 7617238
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    ||||||||||||||||||||||||  ||| ||||| ||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  7617133 ggaaaatgttacatgaacaccctttattcatacactccattatacaccccatgtattagggatattttggtaagttcatctcacaaccacactttatctt 7617232  T
Q  350 ctattt 355  Q
    ||||||    
T  7617233 ctattt 7617238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 244 - 357
Target Start/End: Original strand, 33801463 - 33801576
Alignment:
Q  244 ttatatggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactt 343  Q
    ||||| ||||||||||||||||||| ||||  || |||||||||||||||||| |||||||||||||||||||| |||| ||||||||| ||||||||||    
T  33801463 ttataaggaaaatgttacatgaacatcctttatttctacaccccattgtacactccatgtattagggatattttagtaagttcatctcacaaccacactt 33801562  T
Q  344 tatcttctatttgt 357  Q
    ||||||||||||||    
T  33801563 tatcttctatttgt 33801576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 250 - 357
Target Start/End: Complemental strand, 41334763 - 41334656
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    ||||||||||||||||||||||||  ||| |||||| |||| ||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  41334763 ggaaaatgttacatgaacaccctttattcatacacctcattatacaccctatgtattagggatattttggtaagttcatctcacaaccacactttatctt 41334664  T
Q  350 ctatttgt 357  Q
    ||||||||    
T  41334663 ctatttgt 41334656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 252 - 355
Target Start/End: Original strand, 5256997 - 5257100
Alignment:
Q  252 aaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatcttct 351  Q
    |||||||||||| |||||| ||  ||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  5256997 aaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaatttcatctcacaaccacactttatcttct 5257096  T
Q  352 attt 355  Q
    ||||    
T  5257097 attt 5257100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 250 - 355
Target Start/End: Original strand, 38470579 - 38470684
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    |||||||||||||| |||||||||  ||| ||||  |||||||||||||||||||||| |||||||||||||||||||| ||| || |||||||||||||    
T  38470579 ggaaaatgttacataaacaccctttattcatacattccattgtacaccccatgtattaaggatattttggtaaattcatttcacaatcacactttatctt 38470678  T
Q  350 ctattt 355  Q
    ||||||    
T  38470679 ctattt 38470684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 245 - 322
Target Start/End: Complemental strand, 33855148 - 33855071
Alignment:
Q  245 tatatggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaa 322  Q
    |||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| | ||||||||||    
T  33855148 tatacggaaaatgttacatgaacaccctttattcctacaccccattgtacaccccatgtattaggaacattttggtaa 33855071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 239 - 349
Target Start/End: Complemental strand, 32473505 - 32473395
Alignment:
Q  239 gtatattatatggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaacca 338  Q
    |||||| || |||||||||||||||||||||||||   || ||||||  |||||||||| |||| ||||||||||||||||||| ||||||||| |||||    
T  32473505 gtatatcatttggaaaatgttacatgaacaccctttaatcatacaccttattgtacaccacatgcattagggatattttggtaatttcatctcacaacca 32473406  T
Q  339 cactttatctt 349  Q
     ||||| ||||    
T  32473405 tactttctctt 32473395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 297 - 357
Target Start/End: Complemental strand, 39122486 - 39122426
Alignment:
Q  297 cccatgtattagggatattttggtaaattcatctcaaaaccacactttatcttctatttgt 357  Q
    ||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||    
T  39122486 cccatgtattaggaatattttggtaaattcatctcacaactacactttatcttctatttgt 39122426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 250 - 349
Target Start/End: Original strand, 17208074 - 17208173
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    |||||||||||| |||||||||||   || |||||   ||||||||||||||| |||| ||| |||||||||||||||||||| ||||| ||||| ||||    
T  17208074 ggaaaatgttacgtgaacaccctttaatcatacactttattgtacaccccatgcattaaggacattttggtaaattcatctcacaaccatactttctctt 17208173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 252 - 308
Target Start/End: Complemental strand, 25915085 - 25915029
Alignment:
Q  252 aaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattag 308  Q
    ||||||||||||||||||||||  |||||||||| |||||||||||| |||||||||    
T  25915085 aaaatgttacatgaacaccctttattcctacacctcattgtacacccaatgtattag 25915029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 250 - 349
Target Start/End: Complemental strand, 30622818 - 30622720
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    ||||||||||||||||||| ||||   || ||||||| |||||| | |||||| |||| ||||||||||||||||| |||||| ||||| ||||| ||||    
T  30622818 ggaaaatgttacatgaacatcctttaatcatacaccctattgta-agcccatgcattaaggatattttggtaaatttatctcacaaccatactttctctt 30622720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 247 - 357
Target Start/End: Original strand, 11582763 - 11582873
Alignment:
Q  247 tatggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttat 346  Q
    |||||||||||||||||||||||||||  |||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||    
T  11582763 tatggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacactttat 11582862  T
Q  347 cttctatttgt 357  Q
    |||||||||||    
T  11582863 cttctatttgt 11582873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 248 - 357
Target Start/End: Original strand, 29705360 - 29705469
Alignment:
Q  248 atggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatc 347  Q
    ||||||||||||||||||||||||||  || |||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||    
T  29705360 atggaaaatgttacatgaacaccctttatttctacaccccattgtacaccccatgtattagggatattttgataagttcatctcacaaccacactttatc 29705459  T
Q  348 ttctatttgt 357  Q
    ||||||||||    
T  29705460 ttctatttgt 29705469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 250 - 357
Target Start/End: Complemental strand, 36743583 - 36743476
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    ||||||||||||||||||||||||  |||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  36743583 ggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacactttatctt 36743484  T
Q  350 ctatttgt 357  Q
    ||||||||    
T  36743483 ctatttgt 36743476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 252 - 355
Target Start/End: Original strand, 42295197 - 42295300
Alignment:
Q  252 aaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatcttct 351  Q
    ||||||||||||||||||||||  |||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  42295197 aaaatgttacatgaacaccctttattcctacacctcattgtacactccatgtattagggatattttggtaagttcatctcacaaccacactttatcttct 42295296  T
Q  352 attt 355  Q
    ||||    
T  42295297 attt 42295300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 250 - 357
Target Start/End: Complemental strand, 2166063 - 2165956
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    ||||||| ||||||||||||| ||  |||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||    
T  2166063 ggaaaatattacatgaacaccatttattcctacaccccattgtataccccatgtattagagatattttggtaagttcatctcataaccacactttatctt 2165964  T
Q  350 ctatttgt 357  Q
    ||||||||    
T  2165963 ctatttgt 2165956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 250 - 357
Target Start/End: Complemental strand, 30660842 - 30660735
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    ||||||||||||||||||||||||  || ||||| |||||||||||||| ||||||||||||||||||||||| ||||||| | ||||||||||||||||    
T  30660842 ggaaaatgttacatgaacaccctttatttctacatcccattgtacaccctatgtattagggatattttggtaagttcatcttacaaccacactttatctt 30660743  T
Q  350 ctatttgt 357  Q
    ||||||||    
T  30660742 ctatttgt 30660735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 250 - 357
Target Start/End: Complemental strand, 42197535 - 42197428
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    ||||||||||||||||||||| ||  |||||||||||||||| |||| | ||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  42197535 ggaaaatgttacatgaacaccatttattcctacaccccattgcacacactatgtattagggatattttggtaagttcatctcacaaccacactttatctt 42197436  T
Q  350 ctatttgt 357  Q
    ||||||||    
T  42197435 ctatttgt 42197428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 250 - 355
Target Start/End: Original strand, 5754903 - 5755008
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    ||||||||||||||||||||| ||  |||||||| ||||||||||| ||||| |||||||||||||||||||| ||||||||| ||||||||||||||||    
T  5754903 ggaaaatgttacatgaacaccttttattcctacatcccattgtacatcccatatattagggatattttggtaagttcatctcacaaccacactttatctt 5755002  T
Q  350 ctattt 355  Q
    ||||||    
T  5755003 ctattt 5755008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 250 - 357
Target Start/End: Original strand, 2546996 - 2547103
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    |||||||||||||||||||| |||  || |||||| |||||||||||| ||||||||||||||||||| |||| ||||||||| ||||||||||||||||    
T  2546996 ggaaaatgttacatgaacactctttatttctacactccattgtacacctcatgtattagggatattttagtaagttcatctcacaaccacactttatctt 2547095  T
Q  350 ctatttgt 357  Q
    ||||||||    
T  2547096 ctatttgt 2547103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 252 - 355
Target Start/End: Complemental strand, 29801048 - 29800945
Alignment:
Q  252 aaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatcttct 351  Q
    |||||||||||| |||||| ||  ||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  29801048 aaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaagttcatctcacaaccacactttatcttct 29800949  T
Q  352 attt 355  Q
    ||||    
T  29800948 attt 29800945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 251 - 357
Target Start/End: Original strand, 45397317 - 45397423
Alignment:
Q  251 gaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatcttc 350  Q
    ||||||||||| |||||||||||  ||||||||||||||| ||||||| |||||||||||||||||| |||| ||||||||| ||||||| |||||||||    
T  45397317 gaaaatgttacgtgaacaccctttattcctacaccccattctacaccctatgtattagggatatttttgtaagttcatctcacaaccacaatttatcttc 45397416  T
Q  351 tatttgt 357  Q
    |||||||    
T  45397417 tatttgt 45397423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 252 - 357
Target Start/End: Complemental strand, 30912660 - 30912555
Alignment:
Q  252 aaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatcttct 351  Q
    ||||||||||||||||||||||  |||||||||||||||||||||  |||||||||||| ||||||||||| ||||||||| |||| ||| |||||||||    
T  30912660 aaaatgttacatgaacaccctttattcctacaccccattgtacacttcatgtattaggggtattttggtaagttcatctcacaaccgcaccttatcttct 30912561  T
Q  352 atttgt 357  Q
    ||||||    
T  30912560 atttgt 30912555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 249 - 357
Target Start/End: Original strand, 1375541 - 1375649
Alignment:
Q  249 tggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatct 348  Q
    |||||||| ||||||||||||| ||  ||| ||||||| |||||||||||||| ||||||||||||||||||||||| |||||| ||| |||||||||||    
T  1375541 tggaaaattttacatgaacaccttttattcatacacccaattgtacaccccatatattagggatattttggtaaatttatctcacaactacactttatct 1375640  T
Q  349 tctatttgt 357  Q
    |||||||||    
T  1375641 tctatttgt 1375649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 252 - 355
Target Start/End: Original strand, 26125637 - 26125740
Alignment:
Q  252 aaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatcttct 351  Q
    |||||||||||| |||||||||  ||| ||||  ||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  26125637 aaaatgttacataaacaccctttattcatacattccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacactttatcttct 26125736  T
Q  352 attt 355  Q
    ||||    
T  26125737 attt 26125740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 252 - 355
Target Start/End: Original strand, 20148762 - 20148865
Alignment:
Q  252 aaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatcttct 351  Q
    |||||||||||| |||||||||  ||| |||| ||||||||||||| ||| |||||||||||||||||||| ||||||||| |||||||||||||| |||    
T  20148762 aaaatgttacataaacaccctttattcatacatcccattgtacacctcatatattagggatattttggtaagttcatctcacaaccacactttatcatct 20148861  T
Q  352 attt 355  Q
    ||||    
T  20148862 attt 20148865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 258 - 357
Target Start/End: Original strand, 31384672 - 31384771
Alignment:
Q  258 ttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatcttctatttgt 357  Q
    ||||||||||||||||  ||| ||||  | |||||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||||    
T  31384672 ttacatgaacaccctttattcttacattctattgtacaccccatgtattaggaatattttggtaagttcatctcacaaccacactttatcttctatttgt 31384771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 252 - 346
Target Start/End: Original strand, 42699259 - 42699353
Alignment:
Q  252 aaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttat 346  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||  |||||||| ||||||||| |||| ||||||||| |||||||||||||    
T  42699259 aaaatgttacatgaacaccctttattcctacaccccattgtacaccttatgtattatggatatttttgtaagttcatctcacaaccacactttat 42699353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 250 - 349
Target Start/End: Original strand, 35181516 - 35181615
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    ||||||||||||||||||||||||   || ||||||| ||||||||||||||| |||||||| |||||||||| ||||||||| ||||| ||||| ||||    
T  35181516 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctcacaaccatactttctctt 35181615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 250 - 357
Target Start/End: Complemental strand, 40528735 - 40528627
Alignment:
Q  250 ggaaaatgttacatgaacacccttat-ttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatct 348  Q
    |||||||  ||||||||||||||| | |||  | ||||||||||||||||||| ||||||||| |||||| |||||| |||||| ||||||||||| |||    
T  40528735 ggaaaataatacatgaacacccttttattcacaaaccccattgtacaccccatatattagggacattttgataaatttatctcacaaccacactttctct 40528636  T
Q  349 tctatttgt 357  Q
    |||||||||    
T  40528635 tctatttgt 40528627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 250 - 349
Target Start/End: Original strand, 34304788 - 34304887
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    ||||||||||||||||||| ||||   || ||||||| ||||||||||||||| |||||||| |||||||||| ||||||||| ||||| ||||| ||||    
T  34304788 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctcacaaccatactttctctt 34304887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 250 - 349
Target Start/End: Complemental strand, 18066818 - 18066719
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    ||||||||||||||||||||||||   || ||||  | |||||||| ||||||||||||||||||||| |||| ||||||||| ||||| ||||| ||||    
T  18066818 ggaaaatgttacatgaacaccctttaatcatacattctattgtacatcccatgtattagggatattttagtaatttcatctcacaaccatactttctctt 18066719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 292 - 355
Target Start/End: Original strand, 9241594 - 9241657
Alignment:
Q  292 tacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatcttctattt 355  Q
    ||||||| || ||||||||||||||| |||| ||||||||| ||||||||||||||||||||||    
T  9241594 tacaccctatatattagggatatttttgtaagttcatctcacaaccacactttatcttctattt 9241657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 285 - 355
Target Start/End: Original strand, 3743806 - 3743876
Alignment:
Q  285 cccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatcttctattt 355  Q
    |||||| |||||||||| ||||| | |||||||| ||| ||||||||| ||||||||||||||||||||||    
T  3743806 cccattatacaccccatatattaagtatattttgataagttcatctcacaaccacactttatcttctattt 3743876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 250 - 343
Target Start/End: Complemental strand, 16603726 - 16603633
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactt 343  Q
    ||||||||||||||| ||||||||   || ||||||  ||| ||||||||||| ||||  || |||||||||||||||||||| ||||| ||||    
T  16603726 ggaaaatgttacatgcacaccctttaatcatacaccttattatacaccccatgcattaaagacattttggtaaattcatctcacaaccatactt 16603633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 252 - 349
Target Start/End: Complemental strand, 33630091 - 33629994
Alignment:
Q  252 aaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    ||||||||||| ||||||||||   || |||||| |||||||||||| ||| |||||||| ||||| |||| ||||||||| ||| | ||||| ||||    
T  33630091 aaaatgttacacgaacaccctttaatcatacacctcattgtacaccctatgcattagggacattttagtaatttcatctcacaactatactttctctt 33629994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 344
Target Start/End: Complemental strand, 16358933 - 16358839
Alignment:
Q  251 gaaaatgttacat-gaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacacttt 344  Q
    ||||||||||||| ||| ||||||   || ||||||| |||||||| |||||| |||| | |||||||| ||||||||||||| ||||| |||||    
T  16358933 gaaaatgttacattgaagaccctttaatcatacaccctattgtacatcccatgcattaagaatattttgataaattcatctcacaaccatacttt 16358839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 292 - 349
Target Start/End: Complemental strand, 10678210 - 10678153
Alignment:
Q  292 tacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    |||||||||| ||||| ||| |||||||||||||||||||| ||||| ||||| ||||    
T  10678210 tacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctt 10678153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 285
Target Start/End: Original strand, 28977144 - 28977181
Alignment:
Q  248 atggaaaatgttacatgaacacccttatttcctacacc 285  Q
    ||||||||||||||||||||||||||  ||||||||||    
T  28977144 atggaaaatgttacatgaacaccctttattcctacacc 28977181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 5e-41; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 248 - 357
Target Start/End: Original strand, 1750412 - 1750521
Alignment:
Q  248 atggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatc 347  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||| ||||||||||||||    
T  1750412 atggaaaatgttacatgaacaccctttattcctacaccccattgtacaccctatgtattagggatatttttgtaagttcatctcacaaccacactttatc 1750511  T
Q  348 ttctatttgt 357  Q
    ||||||||||    
T  1750512 ttctatttgt 1750521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 251 - 357
Target Start/End: Original strand, 19047158 - 19047264
Alignment:
Q  251 gaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatcttc 350  Q
    |||||||||||||||||||||||  ||||||||  ||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  19047158 gaaaatgttacatgaacaccctttattcctacattccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacactttatcttc 19047257  T
Q  351 tatttgt 357  Q
    |||||||    
T  19047258 tatttgt 19047264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 250 - 355
Target Start/End: Complemental strand, 12302353 - 12302248
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    ||||||||||||||||||||||||  || |||||||||||||||||||| |||||||||||||||||| |||| ||||||||| ||||||||||||||||    
T  12302353 ggaaaatgttacatgaacaccctttatttctacaccccattgtacaccctatgtattagggatatttttgtaagttcatctcacaaccacactttatctt 12302254  T
Q  350 ctattt 355  Q
    ||||||    
T  12302253 ctattt 12302248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 248 - 352
Target Start/End: Original strand, 16096745 - 16096849
Alignment:
Q  248 atggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatc 347  Q
    ||||||||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||| | || |||||| ||||||||||||||    
T  16096745 atggaaaatgttacatgaacaccctttattcctacaccccattatacaccccatgtattagggatattttggtgagttaatctcacaaccacactttatc 16096844  T
Q  348 ttcta 352  Q
    |||||    
T  16096845 ttcta 16096849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 250 - 357
Target Start/End: Original strand, 30838632 - 30838739
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    ||||||||||||||||||||||||  || ||||| |  ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  30838632 ggaaaatgttacatgaacaccctttatttctacatcttattgtacaccccatgtattagggatattttggtaagttcatctcacaaccacactttatctt 30838731  T
Q  350 ctatttgt 357  Q
    ||||||||    
T  30838732 ctatttgt 30838739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 252 - 355
Target Start/End: Complemental strand, 43490499 - 43490396
Alignment:
Q  252 aaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatcttct 351  Q
    ||||||||||||||||||||||  |||||||| |||||||||||| | ||||||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  43490499 aaaatgttacatgaacaccctttattcctacatcccattgtacactctatgtattagggatattttggtaagttcatctcataaccacactttatcttct 43490400  T
Q  352 attt 355  Q
    ||||    
T  43490399 attt 43490396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 250 - 357
Target Start/End: Complemental strand, 4764826 - 4764719
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    |||||||||||||| |||||| ||  ||||||||||| ||||||||||||||||||||   |||||||||||||||||||||| ||||||||||||||||    
T  4764826 ggaaaatgttacatcaacaccatttattcctacaccctattgtacaccccatgtattataaatattttggtaaattcatctcacaaccacactttatctt 4764727  T
Q  350 ctatttgt 357  Q
    ||||||||    
T  4764726 ctatttgt 4764719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 240 - 355
Target Start/End: Complemental strand, 43335873 - 43335758
Alignment:
Q  240 tatattatatggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccac 339  Q
    |||| |||| ||||||||||| ||||||| | ||  |||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||| ||| ||    
T  43335873 tataatataaggaaaatgttatatgaacatcatttattcctacacctcattgtacatcccatgtattagggatattttggtaagttcatctcacaactac 43335774  T
Q  340 actttatcttctattt 355  Q
    ||||||||||||||||    
T  43335773 actttatcttctattt 43335758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 251 - 357
Target Start/End: Complemental strand, 34817875 - 34817769
Alignment:
Q  251 gaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatcttc 350  Q
    |||||||||||||||||||||||  |||  ||||| |||||||||||||||| | || | | |||||||||||||||||||| ||||||||||| |||||    
T  34817875 gaaaatgttacatgaacaccctttattcacacacctcattgtacaccccatgcactacgcacattttggtaaattcatctcacaaccacactttctcttc 34817776  T
Q  351 tatttgt 357  Q
    |||||||    
T  34817775 tatttgt 34817769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 248 - 355
Target Start/End: Complemental strand, 13780837 - 13780730
Alignment:
Q  248 atggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatc 347  Q
    |||||||||||||||| |||||  ||  |||  ||||| |||||||||||||||  ||||||||||||||| ||||||||||||| ||||||||||| ||    
T  13780837 atggaaaatgttacatcaacacattttattcacacacctcattgtacaccccatacattagggatattttgataaattcatctcacaaccacactttctc 13780738  T
Q  348 ttctattt 355  Q
    ||||||||    
T  13780737 ttctattt 13780730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 250 - 349
Target Start/End: Original strand, 43114557 - 43114656
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    ||||||||||||||||||||||||   || ||||||| ||||||||||||||| |||||||| |||||||||| ||||||||| ||||| ||||| ||||    
T  43114557 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctcacaaccatactttctctt 43114656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 252 - 329
Target Start/End: Original strand, 33229303 - 33229381
Alignment:
Q  252 aaaatgttacatgaacacccttat-ttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatc 329  Q
    |||||| ||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  33229303 aaaatgatacatgaacacccttttattcctacacctcattgtacaccccatgtattagggatattttggtaagttcatc 33229381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 247 - 349
Target Start/End: Complemental strand, 12415563 - 12415461
Alignment:
Q  247 tatggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttat 346  Q
    |||||||||||||||||||||||||||   || ||||||  ||||||||||||||| |||||||| |||||||||| || |||||| ||||| ||||| |    
T  12415563 tatggaaaatgttacatgaacaccctttaatcatacaccttattgtacaccccatgcattagggacattttggtaattttatctcacaaccatactttct 12415464  T
Q  347 ctt 349  Q
    |||    
T  12415463 ctt 12415461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 247 - 349
Target Start/End: Complemental strand, 12427623 - 12427521
Alignment:
Q  247 tatggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttat 346  Q
    |||||||||||||||||||||||||||   || ||||||  ||||||||||||||| |||||||| |||||||||| || |||||| ||||| ||||| |    
T  12427623 tatggaaaatgttacatgaacaccctttaatcatacaccttattgtacaccccatgcattagggacattttggtaattttatctcacaaccatactttct 12427524  T
Q  347 ctt 349  Q
    |||    
T  12427523 ctt 12427521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 252 - 349
Target Start/End: Complemental strand, 11825752 - 11825655
Alignment:
Q  252 aaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    ||||||||||||||||||||||   || ||||||| ||||||||||||||| |||||||| |||||||||| ||||||||| || || ||||| ||||    
T  11825752 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctcacaatcatactttctctt 11825655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 252 - 349
Target Start/End: Complemental strand, 41282072 - 41281975
Alignment:
Q  252 aaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    ||||||||||||||||||||||   || ||||||| ||||||||||||||| |||||||| |||||| ||| ||||||||| ||||| ||||| ||||    
T  41282072 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttgataatttcatctcacaaccatactttctctt 41281975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 250 - 349
Target Start/End: Original strand, 16803968 - 16804067
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    ||||||||||||||||||||||||   || ||||||| |||||||| |||||| |||||||| |||||| ||| ||||||||| ||||| ||||| ||||    
T  16803968 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacatcccatgcattagggacattttgataatttcatctcacaaccatactttctctt 16804067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 250 - 349
Target Start/End: Original strand, 16843250 - 16843349
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    ||||||||||||||||||||||||   || ||||||| |||||||| |||||| |||||||| |||||| ||| ||||||||| ||||| ||||| ||||    
T  16843250 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacatcccatgcattagggacattttgataatttcatctcacaaccatactttctctt 16843349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 252 - 357
Target Start/End: Complemental strand, 8896681 - 8896576
Alignment:
Q  252 aaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatcttct 351  Q
    ||||||||||||||||||||||  |||  |||  ||||||||||||| ||  | |||| |||||||||||||||||||||| || |||||||| | ||||    
T  8896681 aaaatgttacatgaacaccctttattcacacattccattgtacaccctatacaataggaatattttggtaaattcatctcacaatcacactttcttttct 8896582  T
Q  352 atttgt 357  Q
    ||||||    
T  8896581 atttgt 8896576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 250 - 343
Target Start/End: Original strand, 18491705 - 18491798
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactt 343  Q
    ||||||||||||||||||||||||   || ||||||| |||||||||| |||| |||| | | |||||||||||||||||||| ||||| ||||    
T  18491705 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacacctcatgcattaagaacattttggtaaattcatctcacaaccatactt 18491798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 292 - 357
Target Start/End: Complemental strand, 42849916 - 42849852
Alignment:
Q  292 tacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatcttctatttgt 357  Q
    ||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||| ||||||||||    
T  42849916 tacaccccatgtattagggatattttgataagttcatctcacaaccacactttat-ttctatttgt 42849852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 250 - 349
Target Start/End: Complemental strand, 966934 - 966835
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    ||||||||||||||||||||||||   || ||||||| ||||||||||||||| |||| | |  ||||||||||||||||||| || || ||||| ||||    
T  966934 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattaagaacgttttggtaaattcatctcacaaacatactttctctt 966835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 250 - 349
Target Start/End: Complemental strand, 34895841 - 34895742
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    ||||| ||||||||||||||| ||   ||  |||||| ||||||||||||||| |||||||| || ||||||||||||||||| || || ||||||||||    
T  34895841 ggaaagtgttacatgaacaccatttaatcacacaccctattgtacaccccatgcattagggacatattggtaaattcatctcacaatcatactttatctt 34895742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 250 - 357
Target Start/End: Original strand, 42026767 - 42026876
Alignment:
Q  250 ggaaaatgttacatgaacaccc--ttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatc 347  Q
    ||||||||||||||||||||||  ||  ||| ||||  |||||||||| |||  | |||||||||||||||| |||||||||||| ||| ||||||| |     
T  42026767 ggaaaatgttacatgaacacccaatttattcatacattccattgtacatcccgcgcattagggatattttggcaaattcatctcacaactacactttctt 42026866  T
Q  348 ttctatttgt 357  Q
    ||||||||||    
T  42026867 ttctatttgt 42026876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 252 - 332
Target Start/End: Complemental strand, 6518566 - 6518487
Alignment:
Q  252 aaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctca 332  Q
    ||||||||||||||||||| ||| | | ||||| | ||||||||||||||| |||||||| |||||||||| |||||||||    
T  6518566 aaaatgttacatgaacacctttaat-catacactctattgtacaccccatgcattagggacattttggtaatttcatctca 6518487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 349
Target Start/End: Complemental strand, 4452012 - 4451951
Alignment:
Q  288 attgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    ||||||||||  ||| ||||||||||||||||||||||||||||| ||||| ||||| ||||    
T  4452012 attgtacaccatatgcattagggatattttggtaaattcatctcacaaccatactttctctt 4451951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 246 - 339
Target Start/End: Original strand, 7070412 - 7070505
Alignment:
Q  246 atatggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccac 339  Q
    ||||| ||||||||||||||||||||||  ||| |||| |||||||||  | |||| |||| |||| |||||| ||||||||||| | ||||||    
T  7070412 atatgaaaaatgttacatgaacaccctttattcatacatcccattgtaacctccatttattggggacattttgataaattcatcttacaaccac 7070505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 357
Target Start/End: Complemental strand, 39149354 - 39149285
Alignment:
Q  288 attgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatcttctatttgt 357  Q
    |||||||| || ||||||||| ||||||||||||| |||||| || ||| |||||||||||| |||||||    
T  39149354 attgtacatcctatgtattagagatattttggtaagttcatcccacaactacactttatcttttatttgt 39149285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 252 - 332
Target Start/End: Complemental strand, 4299518 - 4299438
Alignment:
Q  252 aaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctca 332  Q
    ||||||||| ||||||||||||   || ||||||| ||||||||| ||||| ||||  || ||||||||||||||||||||    
T  4299518 aaaatgttatatgaacaccctttaatcatacaccctattgtacactccatgcattaatgacattttggtaaattcatctca 4299438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 332
Target Start/End: Original strand, 14285676 - 14285758
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctca 332  Q
    ||||||| |||||  |||||||||   || ||||||| ||||||||||| || |||||  |||||||||||||||||||||||    
T  14285676 ggaaaatattacacaaacaccctttaatcatacaccctattgtacaccctatatattaaagatattttggtaaattcatctca 14285758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 273
Target Start/End: Complemental strand, 42849951 - 42849923
Alignment:
Q  245 tatatggaaaatgttacatgaacaccctt 273  Q
    |||||||||||||||||||||||||||||    
T  42849951 tatatggaaaatgttacatgaacaccctt 42849923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 273
Target Start/End: Original strand, 42849962 - 42849990
Alignment:
Q  245 tatatggaaaatgttacatgaacaccctt 273  Q
    |||||||||||||||||||||||||||||    
T  42849962 tatatggaaaatgttacatgaacaccctt 42849990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 250 - 357
Target Start/End: Original strand, 685 - 792
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    ||||||||||||||||||||||||  |||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  685 ggaaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtattagggatattttggtaagttcatctcacaaccacactttatctt 784  T
Q  350 ctatttgt 357  Q
    ||||||||    
T  785 ctatttgt 792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 7e-40; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 250 - 357
Target Start/End: Complemental strand, 9698433 - 9698326
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    ||||||||||||||||||||||||  |||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  9698433 ggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacactttatctt 9698334  T
Q  350 ctatttgt 357  Q
    ||||||||    
T  9698333 ctatttgt 9698326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 250 - 357
Target Start/End: Complemental strand, 26670109 - 26670002
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    ||||||||||||||||||||||||  |||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  26670109 ggaaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtattagggatattttggtaagttcatctcacaaccacactttatctt 26670010  T
Q  350 ctatttgt 357  Q
    ||||||||    
T  26670009 ctatttgt 26670002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 250 - 357
Target Start/End: Original strand, 26466799 - 26466906
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    |||||||||||||| |||||||||  ||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||| ||||||||||||||||    
T  26466799 ggaaaatgttacataaacaccctttattcctacaccccattgtacactccatgtattagggttattttggtaagttcatctcacaaccacactttatctt 26466898  T
Q  350 ctatttgt 357  Q
    ||||||||    
T  26466899 ctatttgt 26466906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 248 - 357
Target Start/End: Complemental strand, 13743323 - 13743214
Alignment:
Q  248 atggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatc 347  Q
    ||||||||||||||||||||||| ||  ||| |||| || ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  13743323 atggaaaatgttacatgaacaccttttattcatacatccaattgtacaccccatgtattagggatattttggtaagttcatctcacaaccacactttatc 13743224  T
Q  348 ttctatttgt 357  Q
    ||||||||||    
T  13743223 ttctatttgt 13743214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 248 - 357
Target Start/End: Complemental strand, 13748823 - 13748714
Alignment:
Q  248 atggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatc 347  Q
    ||||||||||||||||||||||| ||  ||| |||| || ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  13748823 atggaaaatgttacatgaacaccttttattcatacatccaattgtacaccccatgtattagggatattttggtaagttcatctcacaaccacactttatc 13748724  T
Q  348 ttctatttgt 357  Q
    ||||||||||    
T  13748723 ttctatttgt 13748714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 250 - 357
Target Start/End: Original strand, 21279929 - 21280036
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    ||||||||||||||||||||||||  || |||||  |||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  21279929 ggaaaatgttacatgaacaccctttatttctacattccattgcacatcccatgtattagggatattttggtaaattcatctcacaaccacactttatctt 21280028  T
Q  350 ctatttgt 357  Q
    ||||||||    
T  21280029 ctatttgt 21280036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 250 - 355
Target Start/End: Complemental strand, 7273435 - 7273330
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    ||||||||||||||||||||||||  ||||||||||  ||||||||||||||||||||| ||||||||||||| ||||||||| || |||||||||||||    
T  7273435 ggaaaatgttacatgaacaccctttattcctacaccttattgtacaccccatgtattagagatattttggtaagttcatctcacaatcacactttatctt 7273336  T
Q  350 ctattt 355  Q
    ||||||    
T  7273335 ctattt 7273330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 252 - 357
Target Start/End: Complemental strand, 24204085 - 24203980
Alignment:
Q  252 aaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatcttct 351  Q
    ||||||||||||||||||| ||  ||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||    
T  24204085 aaaatgttacatgaacaccatttattcctacaccctattgtacactccatgtattagggatattttggtaagttcatctcacaaccacactttatattct 24203986  T
Q  352 atttgt 357  Q
    ||||||    
T  24203985 atttgt 24203980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 249 - 355
Target Start/End: Original strand, 30014342 - 30014448
Alignment:
Q  249 tggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatct 348  Q
    |||||||||||||||||||||||||  |||||||| |||||| |||| ||||||||||||| |||||||||||| ||||||||| ||||| |||||||||    
T  30014342 tggaaaatgttacatgaacaccctttattcctacatcccattatacatcccatgtattaggcatattttggtaagttcatctcacaaccatactttatct 30014441  T
Q  349 tctattt 355  Q
    |||||||    
T  30014442 tctattt 30014448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 250 - 357
Target Start/End: Original strand, 7292747 - 7292854
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    ||||||||||||| ||||||| ||  ||| |||||| |||| ||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  7292747 ggaaaatgttacaagaacaccatttattcatacacctcattatacaccctatgtattagggatattttggtaagttcatctcacaaccacactttatctt 7292846  T
Q  350 ctatttgt 357  Q
    ||||||||    
T  7292847 ctatttgt 7292854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 252 - 355
Target Start/End: Original strand, 30735984 - 30736087
Alignment:
Q  252 aaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatcttct 351  Q
    ||||||||||||||||||  ||  |||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||| || |||||||||||||||    
T  30735984 aaaatgttacatgaacactttttattcctacaccccattgtacacctcatgtattagtgatattttggtaagttcatctcacaatcacactttatcttct 30736083  T
Q  352 attt 355  Q
    ||||    
T  30736084 attt 30736087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 250 - 355
Target Start/End: Original strand, 3213400 - 3213505
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    |||||||||||||| |||||||||  ||| |||| | ||||||||||||||||||||| |||||||||||||||||||| ||| ||||| ||||||||||    
T  3213400 ggaaaatgttacataaacaccctttattcatacatctcattgtacaccccatgtattaaggatattttggtaaattcatttcacaaccatactttatctt 3213499  T
Q  350 ctattt 355  Q
    ||||||    
T  3213500 ctattt 3213505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 250 - 355
Target Start/End: Original strand, 7367549 - 7367654
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    ||||||||||| ||||||| | ||  ||| |||||| ||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||| ||    
T  7367549 ggaaaatgttatatgaacatcatttattcatacacctcattgtacatcccatgtattagggatattttggtaagttcatctcacaaccacactttatttt 7367648  T
Q  350 ctattt 355  Q
    ||||||    
T  7367649 ctattt 7367654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 250 - 355
Target Start/End: Complemental strand, 21293777 - 21293672
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    |||||||||||||| |||||||||  ||| ||||   || |||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||    
T  21293777 ggaaaatgttacataaacaccctttattcatacatttcactgtacaccccatgtattaaggatattttggtaaattcatttcacaaccacactttatctt 21293678  T
Q  350 ctattt 355  Q
    ||||||    
T  21293677 ctattt 21293672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 252 - 349
Target Start/End: Original strand, 27441544 - 27441641
Alignment:
Q  252 aaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    ||||||||||||||||||||||   || ||||||| |||||||| || |||||||| |||||||||||||||||||||||| ||||| ||||| ||||    
T  27441544 aaaatgttacatgaacaccctttaatcatacaccctattgtacatcctatgtattaaggatattttggtaaattcatctcacaaccatactttctctt 27441641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 245 - 349
Target Start/End: Original strand, 33253908 - 33254012
Alignment:
Q  245 tatatggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacacttt 344  Q
    |||||||||||||||||||||||||| ||   ||  |||||| ||||||||||||||| |||||||| || ||||||||||||||||| || || |||||    
T  33253908 tatatggaaaatgttacatgaacaccatttaatcacacaccctattgtacaccccatgcattagggacatattggtaaattcatctcacaatcatacttt 33254007  T
Q  345 atctt 349  Q
    |||||    
T  33254008 atctt 33254012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 250 - 349
Target Start/End: Original strand, 33242403 - 33242502
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    ||||||||||||||||||||| ||   || ||||||  |||||||||||||||||||| ||| |||||||||||||||||||| || || ||||| ||||    
T  33242403 ggaaaatgttacatgaacaccatttaatcatacaccttattgtacaccccatgtattaaggacattttggtaaattcatctcacaaacatactttctctt 33242502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 250 - 327
Target Start/End: Complemental strand, 31109322 - 31109245
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattca 327  Q
    ||||||||||||||||||||||||   || |||| |||||| ||||||||||| | ||||||||||||| ||||||||    
T  31109322 ggaaaatgttacatgaacaccctttaatcatacatcccattatacaccccatgcactagggatattttgataaattca 31109245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 7e-40; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 250 - 357
Target Start/End: Original strand, 40808865 - 40808972
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    |||||||||||||| |||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  40808865 ggaaaatgttacatcaacaccatttattcctacaccccattgtacaccccatgtattagggatattttggtaagttcatctcacaaccacactttatctt 40808964  T
Q  350 ctatttgt 357  Q
    ||||||||    
T  40808965 ctatttgt 40808972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 250 - 357
Target Start/End: Original strand, 46941053 - 46941160
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    ||||||||||||||||||||||||  |||||||| | |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  46941053 ggaaaatgttacatgaacaccctttattcctacatctcattgtacaccccatgtattagggatattttggtaagttcatctcacaaccacactttatctt 46941152  T
Q  350 ctatttgt 357  Q
    ||||||||    
T  46941153 ctatttgt 46941160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 247 - 357
Target Start/End: Original strand, 42100685 - 42100795
Alignment:
Q  247 tatggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttat 346  Q
    |||||||||||||||||||||||||||  |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||    
T  42100685 tatggaaaatgttacatgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttggtaagttcatctcacaaccacattttat 42100784  T
Q  347 cttctatttgt 357  Q
    ||| |||||||    
T  42100785 cttttatttgt 42100795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 251 - 357
Target Start/End: Original strand, 54237097 - 54237203
Alignment:
Q  251 gaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatcttc 350  Q
    |||||||||||||||||||||||  |||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  54237097 gaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacactttatcttc 54237196  T
Q  351 tatttgt 357  Q
    |||||||    
T  54237197 tatttgt 54237203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 250 - 357
Target Start/End: Original strand, 25413681 - 25413788
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||  |||||||||||||||||| |||| ||||||||| ||||||||||||||||    
T  25413681 ggaaaatgttacatgaacaccctttattcctacaccccattgtacaccttatgtattagggatatttttgtaagttcatctcacaaccacactttatctt 25413780  T
Q  350 ctatttgt 357  Q
    ||||||||    
T  25413781 ctatttgt 25413788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 250 - 357
Target Start/End: Complemental strand, 54246248 - 54246141
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||| ||||||||| |||||||| |||| ||||||||| ||||||||||||||||    
T  54246248 ggaaaatgttacatgaacaccctttattcctacaccccattgtacaccctatgtattagagatatttttgtaagttcatctcacaaccacactttatctt 54246149  T
Q  350 ctatttgt 357  Q
    ||||||||    
T  54246148 ctatttgt 54246141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 251 - 357
Target Start/End: Complemental strand, 42394518 - 42394412
Alignment:
Q  251 gaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatcttc 350  Q
    |||||||||||||||||||||||  ||||||||  ||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  42394518 gaaaatgttacatgaacaccctttattcctacattccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacactttatcttc 42394419  T
Q  351 tatttgt 357  Q
    |||||||    
T  42394418 tatttgt 42394412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 250 - 355
Target Start/End: Complemental strand, 24688502 - 24688397
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    ||||||||||||||||||||||||  || |||||| ||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  24688502 ggaaaatgttacatgaacaccctttatttctacactccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacactttatctt 24688403  T
Q  350 ctattt 355  Q
    ||||||    
T  24688402 ctattt 24688397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 248 - 355
Target Start/End: Complemental strand, 45127030 - 45126923
Alignment:
Q  248 atggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatc 347  Q
    |||||||||||||||| |||||||||  ||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||     
T  45127030 atggaaaatgttacataaacaccctttattcatacatcccattgtacaccccatgtattagggatattttggtaagttcatctcacaaccacactttatt 45126931  T
Q  348 ttctattt 355  Q
    ||||||||    
T  45126930 ttctattt 45126923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 249 - 357
Target Start/End: Original strand, 36150129 - 36150237
Alignment:
Q  249 tggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatct 348  Q
    |||||||||||||||||| ||||||  ||| ||||||||||| ||||||| |||||| |||||||||||||||| ||||||||| |||||||||||||||    
T  36150129 tggaaaatgttacatgaataccctttattcatacaccccattatacaccctatgtatcagggatattttggtaagttcatctcacaaccacactttatct 36150228  T
Q  349 tctatttgt 357  Q
    |||||||||    
T  36150229 tctatttgt 36150237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 250 - 357
Target Start/End: Complemental strand, 47191125 - 47191019
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    ||||||||||||||||||||||||  |||||||||| |||||||||||| ||||||||| ||||||||| ||| ||||||||| ||||||||||||||||    
T  47191125 ggaaaatgttacatgaacaccctttattcctacacctcattgtacaccc-atgtattagagatattttgataagttcatctcacaaccacactttatctt 47191027  T
Q  350 ctatttgt 357  Q
    ||||||||    
T  47191026 ctatttgt 47191019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 251 - 357
Target Start/End: Original strand, 40480750 - 40480856
Alignment:
Q  251 gaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatcttc 350  Q
    |||||||||||||||||||||||  ||| ||  |||||||||||| || ||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  40480750 gaaaatgttacatgaacaccctttattcatatgccccattgtacatcctatgtattagggatattttggtaagttcatctcacaaccacactttatcttc 40480849  T
Q  351 tatttgt 357  Q
    |||||||    
T  40480850 tatttgt 40480856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 252 - 357
Target Start/End: Complemental strand, 53581956 - 53581851
Alignment:
Q  252 aaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatcttct 351  Q
    |||||||||||||||||| |||  ||| ||||| |||||||||| || ||||||||||||||||||| ||| ||||||||| ||||||||||||||||||    
T  53581956 aaaatgttacatgaacactctttattcatacactccattgtacatcctatgtattagggatattttgataagttcatctcacaaccacactttatcttct 53581857  T
Q  352 atttgt 357  Q
    ||||||    
T  53581856 atttgt 53581851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 252 - 357
Target Start/End: Original strand, 27748565 - 27748670
Alignment:
Q  252 aaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatcttct 351  Q
    ||||||||||||||||||| ||  ||| |||||| |||| ||||||  ||||||||||||||||||||||| ||||||||| ||| | ||||||||||||    
T  27748565 aaaatgttacatgaacaccttttattcatacacctcattatacaccttatgtattagggatattttggtaagttcatctcacaacaatactttatcttct 27748664  T
Q  352 atttgt 357  Q
    ||||||    
T  27748665 atttgt 27748670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 250 - 355
Target Start/End: Complemental strand, 53273784 - 53273679
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    ||||||||||| ||||||| | ||  |||||| ||| ||||||||| |||||||||||||||||||||||||| ||||||||| ||||| ||||||||||    
T  53273784 ggaaaatgttatatgaacatcatttattcctatacctcattgtacatcccatgtattagggatattttggtaagttcatctcacaaccatactttatctt 53273685  T
Q  350 ctattt 355  Q
     |||||    
T  53273684 ttattt 53273679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 250 - 349
Target Start/End: Complemental strand, 4190365 - 4190266
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    ||||||||||||||||||||||||   || ||||||| ||||||||||  ||||||||| ||||||||||||||||||||||| ||||| ||||| ||||    
T  4190365 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccttatgtattagagatattttggtaaattcatctcacaaccatactttctctt 4190266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 250 - 349
Target Start/End: Original strand, 9434124 - 9434223
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    ||||||||||||||||||||||||   || ||||| | ||||||||||||||| |||||||| |||||||||| ||||||||| ||||| ||||| ||||    
T  9434124 ggaaaatgttacatgaacaccctttaatcatacactctattgtacaccccatgcattagggacattttggtaatttcatctcacaaccatactttctctt 9434223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 250 - 349
Target Start/End: Complemental strand, 10457992 - 10457893
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    ||||||||||||||||||||| ||   || ||||||| ||||||||||||||| |||| ||||||||||||||||| |||||| ||||| ||||| ||||    
T  10457992 ggaaaatgttacatgaacaccttttaatcatacaccctattgtacaccccatgcattaaggatattttggtaaatttatctcacaaccatactttctctt 10457893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 285 - 357
Target Start/End: Original strand, 51249343 - 51249415
Alignment:
Q  285 cccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatcttctatttgt 357  Q
    |||||| |||||| |||| |||| |||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  51249343 cccattatacacctcatgcattaaggatattttggtaaattcatctcacaaccacactttctcttctatttgt 51249415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 250 - 338
Target Start/End: Original strand, 25996268 - 25996356
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaacca 338  Q
    ||||||||||||||||||||||||   || |||| |  |||||||||||||| ||||| ||| |||||||||||||||||||| |||||    
T  25996268 ggaaaatgttacatgaacaccctttaatcatacatcttattgtacaccccatatattaaggacattttggtaaattcatctcacaacca 25996356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 292 - 355
Target Start/End: Original strand, 52629870 - 52629933
Alignment:
Q  292 tacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatcttctattt 355  Q
    ||||||| |||||||| ||||||||| |||| ||||||||| ||||||||||||||||||||||    
T  52629870 tacaccctatgtattaaggatatttttgtaagttcatctcacaaccacactttatcttctattt 52629933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 254 - 352
Target Start/End: Complemental strand, 29558330 - 29558232
Alignment:
Q  254 aatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatcttcta 352  Q
    ||||||| ||||||||||||  ||| |||| | |||||||||||| || ||||||| |||| ||||||||||||||||| || |||| ||||| |||||    
T  29558330 aatgttatatgaacaccctttattcatacatctcattgtacaccctatatattaggaatatattggtaaattcatctcacaatcacattttattttcta 29558232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 250 - 349
Target Start/End: Complemental strand, 52628077 - 52627978
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    |||||||||||| |||||||||||   || |||| || |||||||||| |||| |||| | |||||||||||||||||||||| || || ||||| ||||    
T  52628077 ggaaaatgttacgtgaacaccctttaatcatacatcctattgtacacctcatgcattaagtatattttggtaaattcatctcacaatcatactttctctt 52627978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 242 - 332
Target Start/End: Original strand, 1078219 - 1078308
Alignment:
Q  242 tattatatggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctca 332  Q
    |||| |||| ||||||||||||||||||||||  ||||| |||| |||||||||||  |||||||| ||||||||| |||  |||||||||    
T  1078219 tattttatgaaaaatgttacatgaacaccctttattcctgcacctcattgtacacctaatgtatta-ggatatttttgtaggttcatctca 1078308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 248 - 349
Target Start/End: Original strand, 34791827 - 34791928
Alignment:
Q  248 atggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatc 347  Q
    ||||||||||||||||||||||||||   || ||||||  |||||| ||| |||| |||||||| |||||  ||| ||||||||| ||||| ||||| ||    
T  34791827 atggaaaatgttacatgaacaccctttaatcatacaccatattgtaaacctcatgcattagggacattttaataatttcatctcacaaccatactttctc 34791926  T
Q  348 tt 349  Q
    ||    
T  34791927 tt 34791928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 280 - 357
Target Start/End: Complemental strand, 11064792 - 11064715
Alignment:
Q  280 tacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatcttctatttgt 357  Q
    |||||| |||||||||||| |||  |||| ||||||||| | ||||||||||| || |||||||  ||||||||||||    
T  11064792 tacacctcattgtacaccctatgctttagagatattttgattaattcatctcataatcacacttactcttctatttgt 11064715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 251 - 357
Target Start/End: Original strand, 112656 - 112762
Alignment:
Q  251 gaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatcttc 350  Q
    |||||||||||||||||||||||  ||||||||  ||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  112656 gaaaatgttacatgaacaccctttattcctacattccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacactttatcttc 112755  T
Q  351 tatttgt 357  Q
    |||||||    
T  112756 tatttgt 112762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 250 - 355
Target Start/End: Complemental strand, 1771366 - 1771261
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||| ||||||| ||||||||    
T  1771366 ggaaaatgttacatgaacaccctttattcctacaccccattgtacaccccatgtattagagatattttgataagttcatctcacaaccacattttatctt 1771267  T
Q  350 ctattt 355  Q
    ||||||    
T  1771266 ctattt 1771261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 250 - 357
Target Start/End: Original strand, 33703141 - 33703248
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    ||||||||||||||||||||||||  || ||||| |  ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  33703141 ggaaaatgttacatgaacaccctttatttctacatcttattgtacaccccatgtattagggatattttggtaagttcatctcacaaccacactttatctt 33703240  T
Q  350 ctatttgt 357  Q
    ||||||||    
T  33703241 ctatttgt 33703248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 246 - 357
Target Start/End: Original strand, 35017729 - 35017839
Alignment:
Q  246 atatggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacacttta 345  Q
    ||||||||||||||||||||||||||||  |||||| | | ||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||    
T  35017729 atatggaaaatgttacatgaacaccctttattcctatatctcattgtacaccccatgtat-agggatattttggtaagttcatctcacaaccacacttta 35017827  T
Q  346 tcttctatttgt 357  Q
    ||||||||||||    
T  35017828 tcttctatttgt 35017839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 245 - 355
Target Start/End: Original strand, 27550304 - 27550414
Alignment:
Q  245 tatatggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacacttt 344  Q
    |||| ||||||||||||||||||||||||  || |||||| |||||||||||| |||||||||||||||||||||||| ||||||| | |||||||||||    
T  27550304 tatagggaaaatgttacatgaacaccctttatttctacactccattgtacacctcatgtattagggatattttggtaagttcatcttacaaccacacttt 27550403  T
Q  345 atcttctattt 355  Q
    |||||||||||    
T  27550404 atcttctattt 27550414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 252 - 357
Target Start/End: Complemental strand, 43949900 - 43949794
Alignment:
Q  252 aaaatgttacatgaacacccttat-ttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatcttc 350  Q
    |||||| ||||||||||||||| | ||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  43949900 aaaatgatacatgaacacccttttattcctgcacctcattgtacaccccatgtattagggatattttggtaagttcatctcacaaccacactttatcttc 43949801  T
Q  351 tatttgt 357  Q
    |||||||    
T  43949800 tatttgt 43949794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 250 - 355
Target Start/End: Original strand, 25051693 - 25051798
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    ||||||||| |||||||||| |||  ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| || |||||||||||||    
T  25051693 ggaaaatgtcacatgaacacactttattcctacaccccattgtacaccctatgtattagggatattttggtaagttcatctcacaatcacactttatctt 25051792  T
Q  350 ctattt 355  Q
    ||||||    
T  25051793 ctattt 25051798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 246 - 355
Target Start/End: Complemental strand, 27316817 - 27316708
Alignment:
Q  246 atatggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacacttta 345  Q
    ||||||||||||||| | ||||||||||  |||||||||| |||| |||||||||||||||| |||||||||||||| ||||||||| ||||||||||||    
T  27316817 atatggaaaatgttaaacgaacaccctttattcctacacctcattatacaccccatgtattaaggatattttggtaagttcatctcataaccacacttta 27316718  T
Q  346 tcttctattt 355  Q
    ||||||||||    
T  27316717 tcttctattt 27316708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 252 - 355
Target Start/End: Complemental strand, 27893940 - 27893837
Alignment:
Q  252 aaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatcttct 351  Q
    |||||||||||| |||||| ||  ||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  27893940 aaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaatttcatctcacaaccacactttatcttct 27893841  T
Q  352 attt 355  Q
    ||||    
T  27893840 attt 27893837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 250 - 357
Target Start/End: Complemental strand, 28982922 - 28982815
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    ||||||||||||||||||||||||  || |||||||| |||||||| ||||| |||||||||||||||||||| ||||||||| |||| |||||||||||    
T  28982922 ggaaaatgttacatgaacaccctttatttctacaccctattgtacatcccatatattagggatattttggtaagttcatctcacaaccgcactttatctt 28982823  T
Q  350 ctatttgt 357  Q
    ||||||||    
T  28982822 ctatttgt 28982815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 252 - 357
Target Start/End: Original strand, 39631102 - 39631208
Alignment:
Q  252 aaaatgttacatgaacacccttat-ttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatcttc 350  Q
    |||||| ||||||||| ||||| | |||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  39631102 aaaatgatacatgaacccccttttattcctacacctcattgtacacctcatgtattagggatattttggtaagttcatctcacaaccacactttatcttc 39631201  T
Q  351 tatttgt 357  Q
    |||||||    
T  39631202 tatttgt 39631208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 250 - 355
Target Start/End: Original strand, 27864564 - 27864669
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    |||||||||||||| |||||| ||  ||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||    
T  27864564 ggaaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaagttcatctcacaaccacactttatttt 27864663  T
Q  350 ctattt 355  Q
    ||||||    
T  27864664 ctattt 27864669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 252 - 357
Target Start/End: Complemental strand, 43514784 - 43514679
Alignment:
Q  252 aaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatcttct 351  Q
    ||||||||||||||||||||||  ||||||||| |||||||||||  |||||||||||| ||||||||||| ||||||||| |||||||| |||||||||    
T  43514784 aaaatgttacatgaacaccctttattcctacactccattgtacacttcatgtattagggttattttggtaagttcatctcacaaccacaccttatcttct 43514685  T
Q  352 atttgt 357  Q
    ||||||    
T  43514684 atttgt 43514679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 250 - 355
Target Start/End: Complemental strand, 55966446 - 55966341
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    |||||||||||||| |||||||||  ||| |||| ||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||| ||||||||    
T  55966446 ggaaaatgttacataaacaccctttattcatacatcccattgtacatcccatgtattagggatattttggtaagttcatctcacaaccacaatttatctt 55966347  T
Q  350 ctattt 355  Q
    ||||||    
T  55966346 ctattt 55966341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 249 - 357
Target Start/End: Original strand, 12496955 - 12497063
Alignment:
Q  249 tggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatct 348  Q
    |||||||||||| ||||||||||||  ||||||||| |||||||||| |||||||||||| ||||||||||||| ||||||| | || ||||||||||||    
T  12496955 tggaaaatgttatatgaacaccctttattcctacactccattgtacatcccatgtattagagatattttggtaagttcatcttacaatcacactttatct 12497054  T
Q  349 tctatttgt 357  Q
    |||||||||    
T  12497055 tctatttgt 12497063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 250 - 357
Target Start/End: Original strand, 28988473 - 28988580
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    ||||||||||||||||||||||||  ||| |||||| |||||||||||||||| | |||||| |||||| ||||||||||||| ||||||||||| ||||    
T  28988473 ggaaaatgttacatgaacaccctttattcatacacctcattgtacaccccatgcactagggacattttgataaattcatctcataaccacactttctctt 28988572  T
Q  350 ctatttgt 357  Q
    ||||||||    
T  28988573 ctatttgt 28988580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 250 - 355
Target Start/End: Original strand, 23035980 - 23036085
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    ||||||||||||||||||  ||||  ||||||||||| ||||||||||| || ||||||||||||||| |||| ||||||||| ||||||||||||||||    
T  23035980 ggaaaatgttacatgaacctcctttattcctacaccctattgtacaccctatatattagggatatttttgtaagttcatctcacaaccacactttatctt 23036079  T
Q  350 ctattt 355  Q
    ||||||    
T  23036080 ctattt 23036085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 253 - 355
Target Start/End: Complemental strand, 23204875 - 23204773
Alignment:
Q  253 aaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatcttcta 352  Q
    ||||||||||||||||| |||  |||||||| ||||||||||| || |||||||||||||||||| |||| ||||| ||| |||||||||||||||||||    
T  23204875 aaatgttacatgaacactctttattcctacatcccattgtacatcctatgtattagggatatttttgtaagttcatgtcacaaccacactttatcttcta 23204776  T
Q  353 ttt 355  Q
    |||    
T  23204775 ttt 23204773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 248 - 357
Target Start/End: Complemental strand, 45490415 - 45490306
Alignment:
Q  248 atggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatc 347  Q
    ||||||||||||||||||||||  ||  ||  |||| || |||||||||| ||||||||||||||| ||| |||||||||||||| ||||||||||||||    
T  45490415 atggaaaatgttacatgaacacattttatttatacatccaattgtacacctcatgtattagggatactttagtaaattcatctcacaaccacactttatc 45490316  T
Q  348 ttctatttgt 357  Q
    ||||||||||    
T  45490315 ttctatttgt 45490306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 247 - 349
Target Start/End: Complemental strand, 17619255 - 17619153
Alignment:
Q  247 tatggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttat 346  Q
    |||||||||||||||||||||||| ||   || ||||||| ||||||||||||||| |||| |||||||||||||||||||||||| ||||| ||||| |    
T  17619255 tatggaaaatgttacatgaacaccttttaatcatacaccctattgtacaccccatgcattaaggatattttggtaaattcatctcacaaccatactttct 17619156  T
Q  347 ctt 349  Q
    |||    
T  17619155 ctt 17619153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 252 - 355
Target Start/End: Original strand, 31680904 - 31681007
Alignment:
Q  252 aaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatcttct 351  Q
    |||||||||| | |||||| ||  ||| ||||  |||||||||||||| | |||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  31680904 aaaatgttacgtaaacaccatttattcatacattccattgtacaccccgtatattagggatattttggtaagttcatctcacaaccacactttatcttct 31681003  T
Q  352 attt 355  Q
    ||||    
T  31681004 attt 31681007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 250 - 357
Target Start/End: Original strand, 41847971 - 41848078
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    ||||||||||||| ||||| |||| ||||  ||||| |||||||||||||||| ||||| || ||||||| ||||||||| || ||||||||||| ||||    
T  41847971 ggaaaatgttacaagaacatccttttttcacacacctcattgtacaccccatgcattagagacattttggcaaattcatcgcacaaccacactttctctt 41848070  T
Q  350 ctatttgt 357  Q
    ||||||||    
T  41848071 ctatttgt 41848078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 250 - 355
Target Start/End: Complemental strand, 48463550 - 48463445
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    |||||||||||||| |||||| ||  ||| ||||   ||||||||| |||||||||||||||||||||||||| ||||||||| ||||| ||||||| ||    
T  48463550 ggaaaatgttacataaacaccatttattcatacatttcattgtacatcccatgtattagggatattttggtaagttcatctcacaaccatactttatttt 48463451  T
Q  350 ctattt 355  Q
    ||||||    
T  48463450 ctattt 48463445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 249 - 349
Target Start/End: Complemental strand, 55272477 - 55272377
Alignment:
Q  249 tggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatct 348  Q
    |||||||||||||||||||| ||||   || ||||| | ||||||||||||||| |||| |||||||||||||||||||||||| ||||| ||||| |||    
T  55272477 tggaaaatgttacatgaacatcctttaatcatacactctattgtacaccccatgcattaaggatattttggtaaattcatctcacaaccatactttctct 55272378  T
Q  349 t 349  Q
    |    
T  55272377 t 55272377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 250 - 349
Target Start/End: Original strand, 711960 - 712059
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    ||||||||||||||||||||||||   || ||||||| ||||||||||| ||| |||| |||||||||||||||||||||||| || || ||||| ||||    
T  711960 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccctatgcattaaggatattttggtaaattcatctcacaaacatactttctctt 712059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 251 - 357
Target Start/End: Original strand, 41878407 - 41878513
Alignment:
Q  251 gaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatcttc 350  Q
    ||||||||||||||||||| |||  ||| |||||| |||||||||||| ||  ||||||||||||||| ||| ||||||||| ||||| || || |||||    
T  41878407 gaaaatgttacatgaacactctttattcatacacctcattgtacaccctatccattagggatattttgataagttcatctcacaaccaaaccttctcttc 41878506  T
Q  351 tatttgt 357  Q
    |||||||    
T  41878507 tatttgt 41878513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 252 - 357
Target Start/End: Original strand, 43735744 - 43735849
Alignment:
Q  252 aaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatcttct 351  Q
    ||||| ||||||||||| ||||  |||||||| | |||| ||||  ||||||||||| ||||||||| ||| ||||||||| || |||||||||||||||    
T  43735744 aaaatattacatgaacatcctttattcctacatctcattatacattccatgtattagagatattttgataagttcatctcacaatcacactttatcttct 43735843  T
Q  352 atttgt 357  Q
    ||||||    
T  43735844 atttgt 43735849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 250 - 357
Target Start/End: Original strand, 21687006 - 21687113
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    ||||||||||||||||||| ||||  ||  ||||||||||| |||| |  |||||||||  ||||||| |||| ||||||||| ||||| ||||||||||    
T  21687006 ggaaaatgttacatgaacatcctttatttttacaccccattatacatcttatgtattagaaatattttagtaagttcatctcataaccatactttatctt 21687105  T
Q  350 ctatttgt 357  Q
    ||||||||    
T  21687106 ctatttgt 21687113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 292 - 357
Target Start/End: Complemental strand, 51512323 - 51512258
Alignment:
Q  292 tacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatcttctatttgt 357  Q
    ||||||||||||||||| ||||||||||||| ||||||| | |||||||||||||||| |||||||    
T  51512323 tacaccccatgtattagagatattttggtaagttcatcttataaccacactttatcttttatttgt 51512258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 252 - 332
Target Start/End: Complemental strand, 3756344 - 3756264
Alignment:
Q  252 aaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctca 332  Q
    ||||||||||||||||||||||   || ||||||| ||||||||||||||| |||| ||||||||| ||||||| ||||||    
T  3756344 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattaaggatattttagtaaatttatctca 3756264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 250 - 349
Target Start/End: Original strand, 32728357 - 32728456
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    ||||||||||||||||||| ||||   || ||||||| ||||||||||||||| |||| ||| ||||| |||||||||||||| || || ||||| ||||    
T  32728357 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacattttagtaaattcatctcacaatcatactttctctt 32728456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 250 - 349
Target Start/End: Complemental strand, 48435679 - 48435580
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    ||||| ||||||||||||||| ||   ||  |||||| ||||||||||||||| |||||||| || ||||||||||||||||| || || ||||||||||    
T  48435679 ggaaagtgttacatgaacaccatttaatcacacaccctattgtacaccccatgcattagggacatattggtaaattcatctcacaatcatactttatctt 48435580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 252 - 338
Target Start/End: Original strand, 35037007 - 35037093
Alignment:
Q  252 aaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaacca 338  Q
    |||||||||||||| |||||||    | ||||| | ||||||||||||||| |||| |||||||||||||||||||||||| |||||    
T  35037007 aaaatgttacatgagcaccctttaaccatacactctattgtacaccccatgcattaaggatattttggtaaattcatctcacaacca 35037093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 252 - 357
Target Start/End: Complemental strand, 41327641 - 41327536
Alignment:
Q  252 aaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatcttct 351  Q
    ||||||||||||  ||||||||  |||  |||||||||||||||||  ||| | || ||| |||||||||||||||||||| | ||||||||| |||||     
T  41327641 aaaatgttacatagacaccctttattcacacaccccattgtacaccttatgcactacggacattttggtaaattcatctcacatccacactttctcttca 41327542  T
Q  352 atttgt 357  Q
    ||||||    
T  41327541 atttgt 41327536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 250 - 330
Target Start/End: Complemental strand, 960970 - 960890
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatct 330  Q
    ||||||||||||||||||||||||   || ||||| | ||||||||||| ||  |||||||| ||||||||||||||||||    
T  960970 ggaaaatgttacatgaacaccctttaatcatacactctattgtacaccctatacattagggacattttggtaaattcatct 960890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 303 - 355
Target Start/End: Complemental strand, 46412516 - 46412464
Alignment:
Q  303 tattagggatattttggtaaattcatctcaaaaccacactttatcttctattt 355  Q
    |||||| ||||||||||||| ||| ||||| ||||||||||||||||||||||    
T  46412516 tattagagatattttggtaagttcttctcacaaccacactttatcttctattt 46412464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 349
Target Start/End: Original strand, 19879987 - 19880053
Alignment:
Q  283 accccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    |||| |||||||||||||| ||||| ||| |||||||||||||||||||| || || ||||| ||||    
T  19879987 accctattgtacaccccatatattatggacattttggtaaattcatctcacaatcatactttctctt 19880053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 330
Target Start/End: Complemental strand, 49229764 - 49229684
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatct 330  Q
    ||||||||||| ||||||| ||||   || ||||||| |||||||||  |||| |||| ||||||| ||||||||||||||    
T  49229764 ggaaaatgttatatgaacatcctttaatcatacaccctattgtacacttcatgcattaaggatattctggtaaattcatct 49229684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 332
Target Start/End: Complemental strand, 46827806 - 46827724
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctca 332  Q
    ||||||||||||||||||||||||   || ||||| | ||||||||||| ||| |||| | |  |||||||||||| ||||||    
T  46827806 ggaaaatgttacatgaacaccctttaatcatacactctattgtacacccaatgcattaagaacgttttggtaaatttatctca 46827724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 250 - 357
Target Start/End: Complemental strand, 14288 - 14181
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    ||||||||||||||||||||||||  || ||||||||||||||||| || |||||||||||||||||| |||| ||||||||| ||||||||||||||||    
T  14288 ggaaaatgttacatgaacaccctttatttctacaccccattgtacatcctatgtattagggatatttttgtaagttcatctcacaaccacactttatctt 14189  T
Q  350 ctatttgt 357  Q
    ||||||||    
T  14188 ctatttgt 14181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 250 - 357
Target Start/End: Complemental strand, 24616 - 24509
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    ||||||||||||||||||||||||  || ||||||||||||||||| || |||||||||||||||||| |||| ||||||||| ||||||||||||||||    
T  24616 ggaaaatgttacatgaacaccctttatttctacaccccattgtacatcctatgtattagggatatttttgtaagttcatctcacaaccacactttatctt 24517  T
Q  350 ctatttgt 357  Q
    ||||||||    
T  24516 ctatttgt 24509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 250 - 354
Target Start/End: Original strand, 11251 - 11355
Alignment:
Q  250 ggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    ||||||||| |||||||||| |||  ||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||    
T  11251 ggaaaatgtcacatgaacacactttattcatacaccccattgtacaccccatatattagggatattttggtaagttcatctcacaaccacactttatctt 11350  T
Q  350 ctatt 354  Q
    |||||    
T  11351 ctatt 11355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 249 - 357
Target Start/End: Complemental strand, 23522 - 23414
Alignment:
Q  249 tggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatct 348  Q
    |||||||||||| ||||||||||||  ||||||||| |||||||||| |||||||||||| ||||||||||||| ||||||| | || ||||||||||||    
T  23522 tggaaaatgttatatgaacaccctttattcctacactccattgtacatcccatgtattagagatattttggtaagttcatcttacaatcacactttatct 23423  T
Q  349 tctatttgt 357  Q
    |||||||||    
T  23422 tctatttgt 23414  T

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Target: scaffold0003 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 252 - 349
Target Start/End: Complemental strand, 45817 - 45720
Alignment:
Q  252 aaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatctt 349  Q
    ||||||||||||||||||||||   || ||||||| |||||||| || |||||||| |||||||||||||||||||||||| ||||| ||||| ||||    
T  45817 aaaatgttacatgaacaccctttaatcatacaccctattgtacatcctatgtattaaggatattttggtaaattcatctcacaaccatactttctctt 45720  T

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Target: scaffold0100 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 249 - 349
Target Start/End: Complemental strand, 35557 - 35457
Alignment:
Q  249 tggaaaatgttacatgaacacccttatttcctacaccccattgtacaccccatgtattagggatattttggtaaattcatctcaaaaccacactttatct 348  Q
    ||||||||||||||| |||||| ||   || ||||||  ||||||||||||||| |||||||| || ||||||||||||||||| ||||| ||||| |||    
T  35557 tggaaaatgttacataaacaccatttaatcatacaccatattgtacaccccatgcattagggacatattggtaaattcatctcacaaccatactttctct 35458  T
Q  349 t 349  Q
    |    
T  35457 t 35457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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