View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1460_low_37 (Length: 344)
Name: NF1460_low_37
Description: NF1460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1460_low_37 |
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Alignment Details
Target: chr8 (Bit Score: 323; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 1535152 - 1534826
Alignment:
| Q |
1 |
ttgctgaggagaagcctgatggcaaggaagatgcagcagcagctgatggaaataaggaaactcctgctaccgaagctaaagaaaaggagcctgaggataa |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1535152 |
ttgctgaggagaagcctgatggcgaggaagatgcagcagcagctgatggaaataaggaaactcctgctaccgaagctaaagaaaaggagcctgaggataa |
1535053 |
T |
|
| Q |
101 |
ggtgaatgaccgactcaattaatgttttctccaattgtcttgaaactgcaactgctactaattttctgcatctcatgatcacgaaataaacggatgattc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1535052 |
ggtgaatgaccgactcaattaatgttttctccaattgtcttgaaactgcaactgctactaattttctgcatctcatgatcacgaaataaacggatgattc |
1534953 |
T |
|
| Q |
201 |
gtcttgtgattgaatgataaatcattcaaaatcaaattcagcttcggttgtctgttaagtgaatcttgatgattttgtcctttattggatcactttttaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1534952 |
gtcttgtgattgaatgataaatcattcaaaatcaaattcagcttcggttgtctgttaagtgaatcttgatgattttgtcctttattggatcactttttaa |
1534853 |
T |
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| Q |
301 |
gttttgtttaaaagttgggactgaggt |
327 |
Q |
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| T |
1534852 |
gttttgtttaaaagttgggactgaggt |
1534826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 1138483 - 1138747
Alignment:
| Q |
1 |
ttgctgaggagaagcctgatggcaaggaagatgcagcagcagctgatggaaataaggaaactcctgctaccgaagctaaagaaaaggagcctgaggataa |
100 |
Q |
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|||||||||| ||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||| |
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| T |
1138483 |
ttgctgaggacaagcctgttggcgaggaagatgcagcagcagctgatggaaacaaggaaactcctgctcccgaagctgaagaaaaggagcctgaggataa |
1138582 |
T |
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| Q |
101 |
ggtgaatgaccgactcaattaatgttttctccaattgtcttgaaactgcaactgctactaattttctgcatctcatgatcacgaaataaacggatgattc |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| || |||| |||| |
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| T |
1138583 |
ggtgaatgaccgactcaattaacgttttctccaattgtcttgaatttacaactgctactaattttctgcatctcatgatcacgagatgaacg---gattt |
1138679 |
T |
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| Q |
201 |
gtcttgtgattgaatgataaatcattcaaaatcaaattcagcttcggttgtctgttaagtgaatcttg |
268 |
Q |
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||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
1138680 |
gtcatgtgattgaatgataaatcattcaaaattaaattcagcttcggttgtctgttaagtgaatcttg |
1138747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 266 - 316
Target Start/End: Original strand, 1138801 - 1138851
Alignment:
| Q |
266 |
ttgatgattttgtcctttattggatcactttttaagttttgtttaaaagtt |
316 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
1138801 |
ttgatgattttgtcctttattggatcactttttaaattttgtttaaaagtt |
1138851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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