View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1460_low_39 (Length: 321)

Name: NF1460_low_39
Description: NF1460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1460_low_39
NF1460_low_39
[»] chr1 (1 HSPs)
chr1 (1-304)||(45739957-45740254)


Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 45739957 - 45740254
Alignment:
Q  1 tatcattagtacgtagggtgcattataaagtttatgggccatgaatctaggtgcattaagaattttacttcnnnnnnnnnnnnnntcagcgtagctccat 100  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||              |||||||||||||||    
T  45739957 tatcattagtccgtagggtgcattataaagtttatgggccatgaatctaggtgcatcaggaattttacttcatatatat------tcagcgtagctccat 45740050  T
Q  101 tacacacccaatgagaactgataagtgtcaaaatcttgcaatgaatattcacaacaaacaaaccacgatcaaagggtagttgggttctagatgacaacta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45740051 tacacacccaatgagaactgataagtgtcaaaatcttgcaatgaatattcacaacaaacaaaccacgatcaaagggtagttgggttctagatgacaacta 45740150  T
Q  201 ttgagtgcattcaaggatcttaatatcaaagcgttcaacaaaataaagcaaagtttccatcatatatgaatgcagaacgtgcaatttgttgtggatatgt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45740151 ttgagtgcattcaaggatcttaatatcaaagcgttcaacaaaataaagcaaagtttccatcatatatgaatgcagaacgtgcaatttgttgtggatatgt 45740250  T

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