View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1460_low_4 (Length: 605)
Name: NF1460_low_4
Description: NF1460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1460_low_4 |
 | |
|
| [»] scaffold0479 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 538; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 18 - 591
Target Start/End: Complemental strand, 33811491 - 33810918
Alignment:
| Q |
18 |
cattaaatgcttggttcttattttccaatccttgctgcaccatctttgacaatagttaccaattgccaagtttgtcaatttgttgctgacatggtagaat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
33811491 |
cattaaatgcttggttcttattttccaatccttgctgcaccatctttgacaatagttaccaattgccaagtttgtcaatttgttactgacatggtagaat |
33811392 |
T |
|
| Q |
118 |
ttttaccaccgcaagctattattcataggcatgctagtggagaaaaattcaacatttccaattgatgcattattgttactattgtggctggaaaccaaca |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33811391 |
ttttaccaccgcaagctattattcataggcatgctagtggagaaaaattcaacatttcccattgatgcattattgttactattgtggctggaaaccaaca |
33811292 |
T |
|
| Q |
218 |
attctccccctccagccaaagggaaactatccttagattagtttggggttgctgccaggcctgcagcttgtttacaaaactctatcttctcttttggtag |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33811291 |
attctccccctccagccaaagggaaactatccttagattagtttggggttgctgccaagcctgcagcttgtttacaaaactctatcttctcttttggtag |
33811192 |
T |
|
| Q |
318 |
agcttttgccatcatatctgctccgttgtcattggtgtgaattttctctatttgcagcagtttattctccaacacatcacgaatccaatgatacctcaca |
417 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33811191 |
agcttttgtcatcatatctgctccgttgtcattggtgtgaattttctctatttgcagcagtttattctccaacacatcacgaatccaatgatacctcaca |
33811092 |
T |
|
| Q |
418 |
tcgatgtgttttgaccttgaatggtatgtcgaattcttgctaaggtgaattgcactttgactatcacaatagagaacataactttcttgattctggccta |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
33811091 |
tcgatgtgttttgaccttgaatggtatgtcgaattcttgctgaggtgaattgcactttgactatcacaatagagaacataaatttcttgattctggccta |
33810992 |
T |
|
| Q |
518 |
actcttgtaggaatttcttcatccacatcatctccttacaaccttcagtgattgcgatgtactctgcttctgtg |
591 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
33810991 |
actcttgcaggaacttcttcatccacatcatctccttacagccttcagtgattgcgatgtactctgcttctgtg |
33810918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 18 - 591
Target Start/End: Complemental strand, 33816409 - 33815836
Alignment:
| Q |
18 |
cattaaatgcttggttcttattttccaatccttgctgcaccatctttgacaatagttaccaattgccaagtttgtcaatttgttgctgacatggtagaat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
33816409 |
cattaaatgcttggttcttattttccaatccttgctgcaccatctttgacaatagttaccaattgccaagtttgtcaatttgttactgacatggtagaat |
33816310 |
T |
|
| Q |
118 |
ttttaccaccgcaagctattattcataggcatgctagtggagaaaaattcaacatttccaattgatgcattattgttactattgtggctggaaaccaaca |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33816309 |
ttttaccaccgcaagctattattcataggcatgctagtggagaaaaattcaacatttcccattgatgcattattgttactattgtggctggaaaccaaca |
33816210 |
T |
|
| Q |
218 |
attctccccctccagccaaagggaaactatccttagattagtttggggttgctgccaggcctgcagcttgtttacaaaactctatcttctcttttggtag |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33816209 |
attctccccctccagccaaagggaaactatccttagattagtttggggttgctgccaagcctgcagcttgtttacaaaactctatcttctcttttggtag |
33816110 |
T |
|
| Q |
318 |
agcttttgccatcatatctgctccgttgtcattggtgtgaattttctctatttgcagcagtttattctccaacacatcacgaatccaatgatacctcaca |
417 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33816109 |
agcttttgtcatcatatctgctccgttgtcattggtgtgaattttctctatttgcagcagtttattctccaacacatcacgaatccaatgatacctcaca |
33816010 |
T |
|
| Q |
418 |
tcgatgtgttttgaccttgaatggtatgtcgaattcttgctaaggtgaattgcactttgactatcacaatagagaacataactttcttgattctggccta |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
33816009 |
tcgatgtgttttgaccttgaatggtatgtcgaattcttgctgaggtgaattgcactttgactatcacaatagagaacataaatttcttgattctggccta |
33815910 |
T |
|
| Q |
518 |
actcttgtaggaatttcttcatccacatcatctccttacaaccttcagtgattgcgatgtactctgcttctgtg |
591 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
33815909 |
actcttgcaggaacttcttcatccacatcatctccttacagccttcagtgattgcgatgtactctgcttctgtg |
33815836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 18 - 217
Target Start/End: Complemental strand, 33807837 - 33807638
Alignment:
| Q |
18 |
cattaaatgcttggttcttattttccaatccttgctgcaccatctttgacaatagttaccaattgccaagtttgtcaatttgttgctgacatggtagaat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
33807837 |
cattaaatgcttggttcttattttccaatccttgctgcaccatctttgacaatagttacccattgccaagtttgtcaatttgttactgacatggtagaat |
33807738 |
T |
|
| Q |
118 |
ttttaccaccgcaagctattattcataggcatgctagtggagaaaaattcaacatttccaattgatgcattattgttactattgtggctggaaaccaaca |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33807737 |
ttttaccaccgcaagctattattcataggcatgctagtggagaaaaattcaacatttcccattgatgcattattgttactattgtggctggaaaccaaca |
33807638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 215 - 587
Target Start/End: Original strand, 4836172 - 4836541
Alignment:
| Q |
215 |
acaattctccccctccagccaaagggaaactatccttagattagtttggggttgctgccaggcctgcagcttgtttacaaaactctatcttctcttttgg |
314 |
Q |
| |
|
||||||||||||||||||||| |||| || ||||| ||||||||||||||||| ||| || ||||||||||| |||||||||||||||||||| || |
|
|
| T |
4836172 |
acaattctccccctccagccataggggaatg--cctta-attagtttggggttgctaccattccagcagcttgtttgcaaaactctatcttctctttcgg |
4836268 |
T |
|
| Q |
315 |
tagagcttttgccatcatatctgctccgttgtcattggtgtgaattttctctatttgcagcagtttattctccaacacatcacgaatccaatgatacctc |
414 |
Q |
| |
|
||| | ||||| |||||| |||||||| || ||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
4836269 |
tagcggttttgtcatcatgtctgctccattctcatttgtgtgaattttctctatttgcagcagtttattctctaacacatcacgtatccaatgatacctc |
4836368 |
T |
|
| Q |
415 |
acatcgatgtgttttgaccttgaatggtatgtcgaattcttgctaaggtgaattgcactttgactatcacaatagagaacataactttcttgattctggc |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4836369 |
acatcgatgtgttttgaccttgaatggtatgtcgaattcttgctgaggtgaattgcactttgactatcacaatagagaacataactttcttgattctggc |
4836468 |
T |
|
| Q |
515 |
ctaactcttgtaggaatttcttcatccacatcatctccttacaaccttcagtgattgcgatgtactctgcttc |
587 |
Q |
| |
|
|||||||||||| || ||||||||||| | |||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
4836469 |
ataactcttgtagaaacttcttcatccataggatctccttacaaccttcagtgattgcgatgtattcagcttc |
4836541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 253 - 431
Target Start/End: Original strand, 24379927 - 24380105
Alignment:
| Q |
253 |
gattagtttggggttgctgccaggcctgcagcttgtttacaaaactctatcttctcttttggtagagcttttgccatcatatctgctccgttgtcattgg |
352 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||| ||||| ||||| |||||| || ||||| || | ||||| |
|
|
| T |
24379927 |
gattagtttggggttgctgccaatccagcagcttgtttgcaaaactctatcttctcttttgatagaggttttgtcatcatgtcggctccattcttattgg |
24380026 |
T |
|
| Q |
353 |
tgtgaattttctctatttgcagcagtttattctccaacacatcacgaatccaatgatacctcacatcgatgtgttttga |
431 |
Q |
| |
|
|||||| |||||||| || || || |||| |||||||||||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
24380027 |
tgtgaactttctctactttcaacaatttactctccaacacatcacgaatccagtgatacctcacatcattgtgttttga |
24380105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 253 - 591
Target Start/End: Original strand, 54967873 - 54968211
Alignment:
| Q |
253 |
gattagtttggggttgctgccaggcctgcagcttgtttacaaaactctatcttctcttttggtagagcttttgccatcatatctgctccgttgtcattgg |
352 |
Q |
| |
|
||||| |||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
54967873 |
gattaatttggggttgctgccaatccagcagcttgtttgcaaaactctatcttctcttttggtagagcttttgtcatcatatctgctccgttctcattgg |
54967972 |
T |
|
| Q |
353 |
tgtgaattttctctatttgcagcagtttattctccaacacatcacgaatccaatgatacctcacatcgatgtgttttgaccttgaatggtatgtcgaatt |
452 |
Q |
| |
|
|||||| |||||||| || || || |||| | |||||||||||||||||||| |||||||||||||| ||||||||||| || || |||||||| || || |
|
|
| T |
54967973 |
tgtgaactttctctactttcaacaatttactttccaacacatcacgaatccagtgatacctcacatcaatgtgttttgatctggagtggtatgttgagtt |
54968072 |
T |
|
| Q |
453 |
cttgctaaggtgaattgcactttgactatcacaatagagaacataactttcttgattctggcctaactcttgtaggaatttcttcatccacatcatctcc |
552 |
Q |
| |
|
|||||| || |||||||| || ||||| || |||||||||||||||||||||||| | |||||||||||||| ||||| ||||||||||||| |||||| |
|
|
| T |
54968073 |
cttgctgagatgaattgcgctctgactgtcgcaatagagaacataactttcttgactttggcctaactcttgcaggaacttcttcatccacaggatctcc |
54968172 |
T |
|
| Q |
553 |
ttacaaccttcagtgattgcgatgtactctgcttctgtg |
591 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
54968173 |
ttacaaccttcagtgattgcgatgtattcagcttctgtg |
54968211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479 (Bit Score: 174; Significance: 3e-93; HSPs: 1)
Name: scaffold0479
Description:
Target: scaffold0479; HSP #1
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 253 - 578
Target Start/End: Complemental strand, 2274 - 1949
Alignment:
| Q |
253 |
gattagtttggggttgctgccaggcctgcagcttgtttacaaaactctatcttctcttttggtagagcttttgccatcatatctgctccgttgtcattgg |
352 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||| |||||||| ||||||||||||||||||| ||| | |||||| |||||||| || ||||||| |
|
|
| T |
2274 |
gattagtttggggttgctgccaatccagcagcttgtttgcaaaactcaatcttctcttttggtagaggtttggtcatcatgtctgctccattctcattgg |
2175 |
T |
|
| Q |
353 |
tgtgaattttctctatttgcagcagtttattctccaacacatcacgaatccaatgatacctcacatcgatgtgttttgaccttgaatggtatgtcgaatt |
452 |
Q |
| |
|
|||||| |||||||| || || || |||| |||||||||||||||||||||| |||||||||||||| || |||||||| || || || ||||| || || |
|
|
| T |
2174 |
tgtgaactttctctactttcaacaatttactctccaacacatcacgaatccagtgatacctcacatcaatatgttttgatctggagtgatatgttgagtt |
2075 |
T |
|
| Q |
453 |
cttgctaaggtgaattgcactttgactatcacaatagagaacataactttcttgattctggcctaactcttgtaggaatttcttcatccacatcatctcc |
552 |
Q |
| |
|
|||||| || ||||| || |||||||| || |||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||| | |||||| |
|
|
| T |
2074 |
cttgctgagatgaatcgcgctttgactgtcgcaatagagaacatagctttcttgattttggcctaactcttgtaggaacttcttcatccataggatctcc |
1975 |
T |
|
| Q |
553 |
ttacaaccttcagtgattgcgatgta |
578 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
1974 |
ttacaaccttcagtgattgcgatgta |
1949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 149; Significance: 2e-78; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 280 - 588
Target Start/End: Original strand, 22981829 - 22982137
Alignment:
| Q |
280 |
gcagcttgtttacaaaactctatcttctcttttggtagagcttttgccatcatatctgctccgttgtcattggtgtgaattttctctatttgcagcagtt |
379 |
Q |
| |
|
||||||||||| |||||||| ||||| ||||||||||||| ||||| |||||| |||||||| || ||||||||||||| |||||||| || || || || |
|
|
| T |
22981829 |
gcagcttgtttgcaaaactcaatcttttcttttggtagaggttttgtcatcatgtctgctccattctcattggtgtgaactttctctactttcaacaatt |
22981928 |
T |
|
| Q |
380 |
tattctccaacacatcacgaatccaatgatacctcacatcgatgtgttttgaccttgaatggtatgtcgaattcttgctaaggtgaattgcactttgact |
479 |
Q |
| |
|
|| |||||||||||||| ||| || || |||||||| || |||||||| || || || ||||||||||| |||||||| || ||||| ||||| ||||| |
|
|
| T |
22981929 |
tactctccaacacatcattaatacagtggtacctcacgtcaatgtgtttcgatctagagtggtatgtcgagttcttgctgagatgaatcgcactctgact |
22982028 |
T |
|
| Q |
480 |
atcacaatagagaacataactttcttgattctggcctaactcttgtaggaatttcttcatccacatcatctccttacaaccttcagtgattgcgatgtac |
579 |
Q |
| |
|
|| |||||||||||||| |||| ||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
22982029 |
gtcgcaatagagaacatagcttttttgattctggcctaactcttgcaggaacttcttcatccacatgatctccttacaaccttcagtgattgtgatgtat |
22982128 |
T |
|
| Q |
580 |
tctgcttct |
588 |
Q |
| |
|
|| |||||| |
|
|
| T |
22982129 |
tcagcttct |
22982137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 280 - 588
Target Start/End: Complemental strand, 23806579 - 23806271
Alignment:
| Q |
280 |
gcagcttgtttacaaaactctatcttctcttttggtagagcttttgccatcatatctgctccgttgtcattggtgtgaattttctctatttgcagcagtt |
379 |
Q |
| |
|
||||||||||| |||||||| ||||| ||||||||||||| ||||| |||||| |||||||| || ||||||||||||| |||||||| || || || || |
|
|
| T |
23806579 |
gcagcttgtttgcaaaactcaatcttttcttttggtagaggttttgtcatcatgtctgctccattctcattggtgtgaactttctctactttcaacaatt |
23806480 |
T |
|
| Q |
380 |
tattctccaacacatcacgaatccaatgatacctcacatcgatgtgttttgaccttgaatggtatgtcgaattcttgctaaggtgaattgcactttgact |
479 |
Q |
| |
|
|| |||||||||||||| ||| || || |||||||| || |||||||| || || || ||||||||||| |||||||| || ||||| ||||| ||||| |
|
|
| T |
23806479 |
tactctccaacacatcattaatacagtggtacctcacgtcaatgtgtttcgatctagagtggtatgtcgagttcttgctgagatgaatcgcactctgact |
23806380 |
T |
|
| Q |
480 |
atcacaatagagaacataactttcttgattctggcctaactcttgtaggaatttcttcatccacatcatctccttacaaccttcagtgattgcgatgtac |
579 |
Q |
| |
|
|| |||||||||||||| |||| ||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
23806379 |
gtcgcaatagagaacatagcttttttgattctggcctaactcttgcaggaacttcttcatccacatgatctccttacaaccttcagtgattgtgatgtat |
23806280 |
T |
|
| Q |
580 |
tctgcttct |
588 |
Q |
| |
|
|| |||||| |
|
|
| T |
23806279 |
tcagcttct |
23806271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 212 - 325
Target Start/End: Original strand, 1104988 - 1105101
Alignment:
| Q |
212 |
ccaacaattctccccctccagccaaagggaaactatccttagattagtttggggttgctgccaggcctgcagcttgtttacaaaactctatcttctcttt |
311 |
Q |
| |
|
||||||||| || ||||| ||| ||| | ||||||| ||||||||| |||||| |||||| || ||||||| | |||| |||| |||| ||||| ||| |
|
|
| T |
1104988 |
ccaacaattatctccctctagctaaacgaaaactatacttagattaatttgggattgctgtcaagcctgcaattgctttataaaaatctaacttcttttt |
1105087 |
T |
|
| Q |
312 |
tggtagagcttttg |
325 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
1105088 |
tggtagagcttttg |
1105101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 357 - 446
Target Start/End: Original strand, 1105112 - 1105201
Alignment:
| Q |
357 |
aattttctctatttgcagcagtttattctccaacacatcacgaatccaatgatacctcacatcgatgtgttttgaccttgaatggtatgt |
446 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||| ||| | || ||||||| || |||| |||||||||||| ||| |||||||||| |
|
|
| T |
1105112 |
aattttctctatttaaagcagtttattctctaacacgtcatgtattcaatgatttcttacattgatgtgttttgatcttaaatggtatgt |
1105201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 5e-36; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 212 - 571
Target Start/End: Original strand, 25003452 - 25003790
Alignment:
| Q |
212 |
ccaacaattctccccctccagccaaagggaaactatccttagattagtttggggttgctgccaggcctgcagcttgtttacaaaactctatcttctcttt |
311 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |||| | | |||||||||||||||||| || | || || |||||||| || | || || |
|
|
| T |
25003452 |
ccaacaattctctccctccagccaaagggaaaatatcttcaaattagtttggggttgctgtatagctttcatattctttacaaaccttt------tcatt |
25003545 |
T |
|
| Q |
312 |
tggtagagcttttgccatcatatctgctccgttgtcattggtgtgaattttctctatttgcagcagtttattctccaacacatcacgaatccaatgatac |
411 |
Q |
| |
|
|||||||| ||||| |||||||| || || ||||||| ||||| |||||||| ||||||| ||| | ||||| |||||||||| || ||| |
|
|
| T |
25003546 |
tggtagagtttttgtcatcatatttgtccctttgtcatcggtgt---ttttctctttttgcagtagtct-ttctctaacacatcac-------at--tac |
25003632 |
T |
|
| Q |
412 |
ctcacatcgatgtgttttgaccttgaatggtatgtcgaattcttgctaaggtgaattgcactttgactatcacaatagagaacataactttcttgattct |
511 |
Q |
| |
|
|||||||| |||||||| |||||||| || |||||||| || || || |||||||||||||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
25003633 |
ctcacatctatgtgttt-gaccttgattg-tatgtcgagttatttctgaggtgaattgcactttgactatcacaatagggaacataactttgttgattca |
25003730 |
T |
|
| Q |
512 |
ggcctaactcttgtaggaatttcttcatccacatcatctccttacaaccttcagtgattg |
571 |
Q |
| |
|
||||| ||||||| | ||| |||||||||||| |||||||||||||| | |||||||| |
|
|
| T |
25003731 |
ggcctgactcttgcatgaacttcttcatccacgggatctccttacaaccgttagtgattg |
25003790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 211 - 241
Target Start/End: Complemental strand, 14178355 - 14178325
Alignment:
| Q |
211 |
accaacaattctccccctccagccaaaggga |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
14178355 |
accaacaattctccccctccagccaaaggga |
14178325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 241
Target Start/End: Original strand, 28607519 - 28607548
Alignment:
| Q |
212 |
ccaacaattctccccctccagccaaaggga |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
28607519 |
ccaacaattctccccctccagccaaaggga |
28607548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 241
Target Start/End: Complemental strand, 12935084 - 12935055
Alignment:
| Q |
212 |
ccaacaattctccccctccagccaaaggga |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
12935084 |
ccaacaattctccccctccagccaaaggga |
12935055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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