View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1460_low_40 (Length: 319)
Name: NF1460_low_40
Description: NF1460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1460_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 48490861 - 48491169
Alignment:
| Q |
1 |
tatatttgattcctaaataatgtgggactttttggtgtaccgaaccaatgctaaaggcacccaaccatcgcatatgtgtgcttatttgtgaaactcaata |
100 |
Q |
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| T |
48490861 |
tatattcgattcctaaataatgtgagactttttggtgtaccggaccaatgctaaaggcacccaaccatcgcatatgtttgcttatttgtgaaactcaata |
48490960 |
T |
|
| Q |
101 |
gagaataaataataaggacaatagagaaccacaatcagaattattattagattagattgaaaaaacacaactatacatggatagaaatagtaaattatag |
200 |
Q |
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| T |
48490961 |
gagaataaataataaggacaatagagaaccacaatcatcattattattagattagattgaaaaaacacaactatacatggatagaaatagtaaattatag |
48491060 |
T |
|
| Q |
201 |
ctctaatgaacaaggttacacttctaccactttgcttcactcatcattaagccatttaattacataaccccgttagaaagcattcactcataaaaaggtc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |
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| T |
48491061 |
ctctaatgaacaaggttacacttctaccactttgcttcactcatcattaagccatttaattacatagcccctttagaaagcattcactcataaaaaggtc |
48491160 |
T |
|
| Q |
301 |
tactctctg |
309 |
Q |
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||||||||| |
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| T |
48491161 |
tactctctg |
48491169 |
T |
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