View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1460_low_43 (Length: 311)
Name: NF1460_low_43
Description: NF1460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1460_low_43 |
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Alignment Details
Target: chr8 (Bit Score: 173; Significance: 5e-93; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 125 - 301
Target Start/End: Original strand, 1535266 - 1535442
Alignment:
| Q |
125 |
gcatatgataggaatttttcccgttagggccatgcttgagtctcggattctgagacgttacagttgacatattacgagaaaagctactaactcgagtctt |
224 |
Q |
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| T |
1535266 |
gcatatgataggaatttttcccgttagggccatgcttgagtctcggattctgagatgttacagttgacatattacgagaaaagctactaactcgagtctt |
1535365 |
T |
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| Q |
225 |
tgttgcatccattcaataatgtccgagaaaagctacattacagttgacacattaggagaaaagctcaaattcatatt |
301 |
Q |
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| T |
1535366 |
tgttgcatccattcaataatgtccgagaaaagctacattacagttgacacattaggagaaaagctcaaattcatatt |
1535442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 131 - 242
Target Start/End: Original strand, 1468499 - 1468611
Alignment:
| Q |
131 |
gataggaatttt-tcccgttagggccatgcttgagtctcggattctgagacgttacagttgacatattacgagaaaagctactaactcgagtctttgttg |
229 |
Q |
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| T |
1468499 |
gataggaatgttgtcccattagggccgtgcttgagtcctgaattctgagacgttacagttgatacattgcgagaaaagctactaactcgagtccttgttg |
1468598 |
T |
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| Q |
230 |
catccattcaata |
242 |
Q |
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| T |
1468599 |
cagccattcaata |
1468611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 1535142 - 1535201
Alignment:
| Q |
1 |
ctcctcagcaacattcttttcagtttcattcgccacttcgtcagtcacccaacgcaatat |
60 |
Q |
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| T |
1535142 |
ctcctcagcaacattcttttcagtttcattcgccacttcgtcagtcacccaacgcaatat |
1535201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 1138492 - 1138444
Alignment:
| Q |
2 |
tcctcagcaacattcttttcagtttcattcgccacttcgtcagtcaccc |
50 |
Q |
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| T |
1138492 |
tcctcagcaacattcttttcagtttcatttgccacttcgtcagtcaccc |
1138444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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