View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1460_low_46 (Length: 297)
Name: NF1460_low_46
Description: NF1460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1460_low_46 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 12 - 282
Target Start/End: Original strand, 12801563 - 12801839
Alignment:
| Q |
12 |
agaagcataggttaaaaggcgataccgatgaagaagttgtgttgttattggtatttccttgaagatcgggaagttgcatgagaccatgatgaagatgaag |
111 |
Q |
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| T |
12801563 |
agaagcttaggttaaaaggcgataccgacgaagaagttgtgttgttattggtatttccttgaagatcaggaagttgcatgagaccatgatgaagatgaag |
12801662 |
T |
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| Q |
112 |
ttgtttgtttgagaattgtccttgatgaaggtcttgttggaaagtttgatttggatcagtgatgaagaaaggtgaggaagacattga------ttgttgt |
205 |
Q |
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| T |
12801663 |
ttgtttgtttgagaattgtccttgatgaaggtcttgttggaaagtttgatttggatcagtgatgaagaaaggtgaggaagacattgattgttgttgttgt |
12801762 |
T |
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| Q |
206 |
tgttgaccaaatgatgatgatgaagattgatgtaaaggtgagattaaatgatgttcatattttggtgtacaaggaat |
282 |
Q |
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| T |
12801763 |
tgttgaccaaatgatgatgatgaagattgatgtaaaggtgagattaaatgatgttcatattttggtgtacaaggaat |
12801839 |
T |
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