View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1460_low_49 (Length: 275)
Name: NF1460_low_49
Description: NF1460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1460_low_49 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 12 - 275
Target Start/End: Original strand, 54790844 - 54791107
Alignment:
| Q |
12 |
ttatacttatgaactgacatttgtaattgtatgcagagcttcaatggactacagctctgaagaagagtcagatatcagtgagtctgagattgaggaatac |
111 |
Q |
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| T |
54790844 |
ttatacttatgaactgacattcgtaactgtatgcagagcttcaatggactacagctctgaagaagagtcagatatcagtgagtctgagattgaggaatac |
54790943 |
T |
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| Q |
112 |
tctgacaaaccttataaggagttaaaggatggtaaatacaaagtgaagaacttaaacggcacactcaggtgcccatattgtgctggaaaaaagaagcaag |
211 |
Q |
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| T |
54790944 |
tctgacaaaccttataaggagttaaaggatggtaaatacaaagtgaagaacttaaacggcacactcaggtgcccatattgtgctggaaaaaagaagcaag |
54791043 |
T |
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| Q |
212 |
agttcaaatataaggatttgatgcaacatgcaaccggagtaagcaaaggttcagcaaacagaaa |
275 |
Q |
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| T |
54791044 |
agttcaaatataaggatttgatgcaacatgcaaccggagtaagcaaaggttcagcaaacagaaa |
54791107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 12 - 275
Target Start/End: Complemental strand, 54778301 - 54778038
Alignment:
| Q |
12 |
ttatacttatgaactgacatttgtaattgtatgcagagcttcaatggactacagctctgaagaagagtcagatatcagtgagtctgagattgaggaatac |
111 |
Q |
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| T |
54778301 |
ttatacttatgaactgacattcgtaactgtatgcagagcttcaatggactacagctctgaagaagagtcagatatcagtgagtctgagattgaggaatac |
54778202 |
T |
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| Q |
112 |
tctgacaaaccttataaggagttaaaggatggtaaatacaaagtgaagaacttaaacggcacactcaggtgcccatattgtgctggaaaaaagaagcaag |
211 |
Q |
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| T |
54778201 |
tctgacaaaccttataaggagttaaaggatggtaaatacaaagtgaagaacttaaacggcacactcaggtgcccatattgtgctggaaaaaagaagcaag |
54778102 |
T |
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| Q |
212 |
agttcaaatataaggatttgatgcaacatgcaaccggagtaagcaaaggttcagcaaacagaaa |
275 |
Q |
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| T |
54778101 |
agttcaaatataaggatttgatgcaacatgaaaccggagtaagcaaaggttcagcaaacagaaa |
54778038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 12 - 275
Target Start/End: Original strand, 52283502 - 52283765
Alignment:
| Q |
12 |
ttatacttatgaactgacatttgtaattgtatgcagagcttcaatggactacagctctgaagaagagtcagatatcagtgagtctgagattgaggaatac |
111 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
52283502 |
ttatacttacgaactgacatttgtaattgtatgcagagcttcaatggactacagctctgaagaagagtcagatatcagcgagtctgagattgaggaatac |
52283601 |
T |
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| Q |
112 |
tctgacaaaccttataaggagttaaaggatggtaaatacaaagtgaagaacttaaacggcacactcaggtgcccatattgtgctggaaaaaagaagcaag |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||| |
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| T |
52283602 |
tctgacaaaccttataaggagttaaaggatggtaaatacaaagtgaagaatttaaacggtacactcaggtgtccatattgtgctggaaaaaagaagcaag |
52283701 |
T |
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| Q |
212 |
agttcaaatataaggatttgatgcaacatgcaaccggagtaagcaaaggttcagcaaacagaaa |
275 |
Q |
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| T |
52283702 |
agttcaaatataaggatttgatgcaacatgcaactggagtaagcaaaggttcagcaaacagaaa |
52283765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 23 - 274
Target Start/End: Original strand, 798789 - 799040
Alignment:
| Q |
23 |
aactgacatttgtaattgtatgcagagcttcaatggactacagctctgaagaagagtcagatatcagtgagtctgagattgaggaatactctgacaaacc |
122 |
Q |
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|||||||||||| ||| || |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||| |
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| T |
798789 |
aactgacatttgaaatcttacgcagagtttcaatggactacagctctgaagaagagtcagagatcagtgagtctgagatcgaggaatactctgagaaacc |
798888 |
T |
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| Q |
123 |
ttataaggagttaaaggatggtaaatacaaagtgaagaacttaaacggcacactcaggtgcccatattgtgctggaaaaaagaagcaagagttcaaatat |
222 |
Q |
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||| | ||||||| || |||||||||||||| |||||| || || || || |||||||| ||||| ||||||| || |||||||| ||||| ||| |
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| T |
798889 |
atatgaagagttaagggccggtaaatacaaagtcaagaacaacaatgggactcttaggtgcccgtattgctctggaaagaaaaagcaagaattcaagtat |
798988 |
T |
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| Q |
223 |
aaggatttgatgcaacatgcaaccggagtaagcaaaggttcagcaaacagaa |
274 |
Q |
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|||||| || ||||||||||| | |||||| |||||||||| |||||||||| |
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| T |
798989 |
aaggatctgttgcaacatgcatctggagtaggcaaaggttcggcaaacagaa |
799040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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