View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1460_low_5 (Length: 594)
Name: NF1460_low_5
Description: NF1460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1460_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 14 - 313
Target Start/End: Complemental strand, 20763120 - 20762821
Alignment:
| Q |
14 |
tactacaaagaagttgatggtgatcataagagaacttggttaaacaatggaaatagttgtcaatgcttgacatcaaccttgaaggtggtagagatgaata |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20763120 |
tactacaaagaagttgatggtgatcataagagaacttggttaaacaatggaaatagttgtcaatgcttgacatcaaccttgaaggtggtagagatgaata |
20763021 |
T |
|
| Q |
114 |
actttactggagctgtgaatgtgattttaatgcttcactttcttatctgcaatgtaactgttttaaaaacgattaatatcaacgtgaaaaacgaagagac |
213 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
20763020 |
agtttactggagctgtgaatgtgattttaatgcttcactttcttatctgcaatgtgactgttttaaaaacgattaatatcaatgtgaaaaacgaagagac |
20762921 |
T |
|
| Q |
214 |
agaggtcgaggaaaaatgtcctaaagtagaagaacttataatgacaacaccaagggcttcaaatgatttagagatattgttctgttattgagcaaagaat |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
20762920 |
tgaggtcgaggaaaaatgtcctaaagtagaagaacttataatgacaacaacaagggcttcaaatgatttatagatattgttctgttattgaagaaagaat |
20762821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 14 - 313
Target Start/End: Complemental strand, 16151684 - 16151385
Alignment:
| Q |
14 |
tactacaaagaagttgatggtgatcataagagaacttggttaaacaatggaaatagttgtcaatgcttgacatcaaccttgaaggtggtagagatgaata |
113 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16151684 |
tactacaaagaagatgatgatgatcataagagaacttggttagacaatggaaatagttgtgaatgcttgacatcaaccttgaaggtggtagagatgaata |
16151585 |
T |
|
| Q |
114 |
actttactggagctgtgaatgtgattttaatgcttcactttcttatctgcaatgtaactgttttaaaaacgattaatatcaacgtgaaaaacgaagagac |
213 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||||||||| ||||||| |||||||||| || | |||||||||| || |||| |||||||| |
|
|
| T |
16151584 |
actttactggatttgtgaatgagattttaatgcttcactttcttatttgcaatgggactgttttaagaagggttaatatcaatgtacaaaatgaagagac |
16151485 |
T |
|
| Q |
214 |
agaggtcgaggaaaaatgtcctaaagtagaagaacttataatgacaacaccaagggcttcaaatgatttagagatattgttctgttattgagcaaagaat |
313 |
Q |
| |
|
||||| | ||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||| || |||||| |||||||| ||| |||| |
|
|
| T |
16151484 |
tgaggtggtggaaaaatgtcgtaaagtagaagaacttatgatgacaaaaccaagggcttcaaatgatttagaaattttgttcagttattgaacaaggaat |
16151385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 379 - 576
Target Start/End: Complemental strand, 20762755 - 20762559
Alignment:
| Q |
379 |
gtaaaaacatcaatgaatgctatgacagattttggttttggttttattaattaaacactaatatgtgtattttagnnnnnnnnn--gcatacttcattgt |
476 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| || |
|
|
| T |
20762755 |
gtaaaaacatcaatgaatgatatgacagattttggttttggttttattaat---acactaatatgtgtattttattttttttgtttgcatacttcatggt |
20762659 |
T |
|
| Q |
477 |
ttttatttacaactattttattaaagatatttattgctatacattaatatagtatgccaaactttttaatacgttcatacaatgatattaacaaaatact |
576 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20762658 |
ttttatttacaactattttattaaacatatttattgctatacattaatatagtatgccaaactttttaatacgttcatacaatgatattaacaaaatact |
20762559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University