View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1460_low_51 (Length: 270)
Name: NF1460_low_51
Description: NF1460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1460_low_51 |
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Alignment Details
Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 12844439 - 12844269
Alignment:
| Q |
1 |
tcatcttcaatatgcggatgataccttatttttggggcaagctattatggcaaacttgtggtctttaaagaccatcatgcgctgttttgagctggcttat |
100 |
Q |
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| T |
12844439 |
tcatcttcaatatgcagatgataccttatttttggggcaagctattatggcaaacttgtggtctttaaagaccatcatgcgttgttttgagctggcttct |
12844340 |
T |
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| Q |
101 |
gggcttaaggtcaacttctccaagagctatgtcatgggcgtgaatgtggggagcgagtttcttgcattggc |
171 |
Q |
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| T |
12844339 |
gggcttaaggtcaacttcgccaagagttatgttatgggggtgaatgtggggagcgattttcttgcactggc |
12844269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 169 - 226
Target Start/End: Complemental strand, 12844150 - 12844093
Alignment:
| Q |
169 |
ggctgggatcctggggtaataagtatattagcctaggtggtagggtggtcctccttaa |
226 |
Q |
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| T |
12844150 |
ggctgggatcatggggtaataagtatattagcctaggtggtagggtggtcctccttaa |
12844093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 169 - 202
Target Start/End: Original strand, 12843776 - 12843809
Alignment:
| Q |
169 |
ggctgggatcctggggtaataagtatattagcct |
202 |
Q |
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| T |
12843776 |
ggctgggatcctggggtaataagtatattagcct |
12843809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 11 - 147
Target Start/End: Original strand, 29681196 - 29681332
Alignment:
| Q |
11 |
tatgcggatgataccttatttttggggcaagctattatggcaaacttgtggtctttaaagaccatcatgcgctgttttgagctggcttatgggcttaagg |
110 |
Q |
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| T |
29681196 |
tatgcggatgatactttattcttggggaaagctactatgacgaacttgtggtctcttaaaaccatcctccgctgttttgagcttgcttcgggcctcaagg |
29681295 |
T |
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| Q |
111 |
tcaacttctccaagagctatgtcatgggcgtgaatgt |
147 |
Q |
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| T |
29681296 |
ttaatttctctaagagttatgtgatgggggtgaatgt |
29681332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 250
Target Start/End: Original strand, 10993186 - 10993259
Alignment:
| Q |
177 |
tcctggggtaataagtatattagcctaggtggtagggtggtcctccttaactctgtcctcaatgttatccctat |
250 |
Q |
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| T |
10993186 |
tcctgggggtataagtatgttaatcttggtggtagggttgttctcctgaactctgtcctcaatgcgatccctat |
10993259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 240
Target Start/End: Original strand, 29681478 - 29681547
Alignment:
| Q |
171 |
ctgggatcctggggtaataagtatattagcctaggtggtagggtggtcctccttaactctgtcctcaatg |
240 |
Q |
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| T |
29681478 |
ctgggctcctggggggataagtatgttagtctcggtggtagagttgttctccttaactccgtcctcaatg |
29681547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 173
Target Start/End: Complemental strand, 36651936 - 36651765
Alignment:
| Q |
2 |
catcttcaatatgcggatgataccttatttttggggcaagctattatggcaaacttgtggtctttaaagaccatcatgcgctgttttgagctggcttatg |
101 |
Q |
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|||||||| ||||||||||| |||||||| |||||| | || | ||||| ||||||||||| | || |||||| | || ||||||||||| |||| | |
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| T |
36651936 |
catcttcagtatgcggatgacaccttattcttgggggaggcaaccatggccaacttgtggtccctcaaaaccatccttcgttgttttgagcttgcttcgg |
36651837 |
T |
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| Q |
102 |
ggcttaaggtcaacttctccaagagctatgtcatgggcgtgaatgtggggagcgagtttcttgcattggctg |
173 |
Q |
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| T |
36651836 |
ggcttaaggtgaatttttctaagagctcggtgatgggggtgaatgttggggacgagttccttggtttggctg |
36651765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 247
Target Start/End: Complemental strand, 36651645 - 36651569
Alignment:
| Q |
171 |
ctgggatcctggggtaataagtatattagcctaggtggtagggtggtcctccttaactctgtcctcaatgttatccc |
247 |
Q |
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| T |
36651645 |
ctgggctcctgggaaaataaatatgttagtcttggtggtagagttgtcctcctgaactccgtcctcaatgttatccc |
36651569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 15272816 - 15272879
Alignment:
| Q |
1 |
tcatcttcaatatgcggatgataccttatttttggggcaagctattatggcaaacttgtggtct |
64 |
Q |
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||||||||| |||||||||||||||||||| |||||| ||||| |||||||||||| |||||| |
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| T |
15272816 |
tcatcttcagtatgcggatgataccttattcttggggaaagcttctatggcaaacttatggtct |
15272879 |
T |
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