View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1460_low_52 (Length: 268)

Name: NF1460_low_52
Description: NF1460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1460_low_52
NF1460_low_52
[»] chr4 (7 HSPs)
chr4 (30-222)||(5664388-5664580)
chr4 (238-268)||(28988470-28988500)
chr4 (230-268)||(55966419-55966457)
chr4 (239-268)||(1771339-1771368)
chr4 (239-268)||(28982895-28982924)
chr4 (239-268)||(33703139-33703168)
chr4 (238-266)||(46827781-46827809)
[»] scaffold0119 (1 HSPs)
scaffold0119 (238-268)||(682-712)
[»] chr8 (4 HSPs)
chr8 (238-268)||(30660815-30660845)
chr8 (238-268)||(36743556-36743586)
chr8 (238-266)||(19386645-19386673)
chr8 (238-266)||(35181513-35181541)
[»] chr6 (4 HSPs)
chr6 (238-268)||(7273408-7273438)
chr6 (238-268)||(26670082-26670112)
chr6 (240-268)||(9698406-9698434)
chr6 (240-268)||(21279928-21279956)
[»] chr5 (2 HSPs)
chr5 (238-268)||(7617130-7617160)
chr5 (239-268)||(18033980-18034009)
[»] chr3 (7 HSPs)
chr3 (238-268)||(24688475-24688505)
chr3 (238-268)||(46941050-46941080)
chr3 (238-268)||(54246221-54246251)
chr3 (239-268)||(47191098-47191127)
chr3 (238-266)||(4190340-4190368)
chr3 (238-266)||(9434121-9434149)
chr3 (240-268)||(25413680-25413708)
[»] chr2 (3 HSPs)
chr2 (238-268)||(12302326-12302356)
chr2 (240-268)||(30838631-30838659)
chr2 (238-266)||(43114554-43114582)
[»] chr1 (1 HSPs)
chr1 (238-268)||(5489773-5489803)
[»] chr7 (5 HSPs)
chr7 (239-268)||(41861672-41861701)
chr7 (240-268)||(9216301-9216329)
chr7 (238-266)||(27535306-27535334)
chr7 (240-268)||(38160667-38160695)
chr7 (238-266)||(40236916-40236944)
[»] scaffold0187 (2 HSPs)
scaffold0187 (240-268)||(14261-14289)
scaffold0187 (240-268)||(24589-24617)


Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 30 - 222
Target Start/End: Complemental strand, 5664580 - 5664388
Alignment:
Q  30 acacacgaaatgagtttaattagatactttttgaatggtgctaattcaaactgtgtcaacaatagacaccatgatggaattctggtgatgtaacttgtaa 129  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5664580 acacacgaaatgagtttaattagatgctttttgaatggtgctaattcaaactgtgtcaacaatagacaccatgatggaattctggtgatgtaacttgtaa 5664481  T
Q  130 ggaccttctggttgtattggctatgcattaggatgttggggtgcttattatgcataggtggtatggtgtcaaatatgtttttggcgtttatcc 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  5664480 ggaccttctggttgtattggctatgcattaggatgttggggtgcttattatgcataggtggtgtggtgtcaaatatgtttttggcgtttatcc 5664388  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 238 - 268
Target Start/End: Original strand, 28988470 - 28988500
Alignment:
Q  238 aaaggaaaatgttacatgaacaccctttatt 268  Q
    |||||||||||||||||||||||||||||||    
T  28988470 aaaggaaaatgttacatgaacaccctttatt 28988500  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 230 - 268
Target Start/End: Complemental strand, 55966457 - 55966419
Alignment:
Q  230 cttttctgaaaggaaaatgttacatgaacaccctttatt 268  Q
    |||||| |||||||||||||||||| |||||||||||||    
T  55966457 cttttccgaaaggaaaatgttacataaacaccctttatt 55966419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 239 - 268
Target Start/End: Complemental strand, 1771368 - 1771339
Alignment:
Q  239 aaggaaaatgttacatgaacaccctttatt 268  Q
    ||||||||||||||||||||||||||||||    
T  1771368 aaggaaaatgttacatgaacaccctttatt 1771339  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 239 - 268
Target Start/End: Complemental strand, 28982924 - 28982895
Alignment:
Q  239 aaggaaaatgttacatgaacaccctttatt 268  Q
    ||||||||||||||||||||||||||||||    
T  28982924 aaggaaaatgttacatgaacaccctttatt 28982895  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 239 - 268
Target Start/End: Original strand, 33703139 - 33703168
Alignment:
Q  239 aaggaaaatgttacatgaacaccctttatt 268  Q
    ||||||||||||||||||||||||||||||    
T  33703139 aaggaaaatgttacatgaacaccctttatt 33703168  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 266
Target Start/End: Complemental strand, 46827809 - 46827781
Alignment:
Q  238 aaaggaaaatgttacatgaacacccttta 266  Q
    |||||||||||||||||||||||||||||    
T  46827809 aaaggaaaatgttacatgaacacccttta 46827781  T

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Target: scaffold0119 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 238 - 268
Target Start/End: Original strand, 682 - 712
Alignment:
Q  238 aaaggaaaatgttacatgaacaccctttatt 268  Q
    |||||||||||||||||||||||||||||||    
T  682 aaaggaaaatgttacatgaacaccctttatt 712  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 238 - 268
Target Start/End: Complemental strand, 30660845 - 30660815
Alignment:
Q  238 aaaggaaaatgttacatgaacaccctttatt 268  Q
    |||||||||||||||||||||||||||||||    
T  30660845 aaaggaaaatgttacatgaacaccctttatt 30660815  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 238 - 268
Target Start/End: Complemental strand, 36743586 - 36743556
Alignment:
Q  238 aaaggaaaatgttacatgaacaccctttatt 268  Q
    |||||||||||||||||||||||||||||||    
T  36743586 aaaggaaaatgttacatgaacaccctttatt 36743556  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 266
Target Start/End: Complemental strand, 19386673 - 19386645
Alignment:
Q  238 aaaggaaaatgttacatgaacacccttta 266  Q
    |||||||||||||||||||||||||||||    
T  19386673 aaaggaaaatgttacatgaacacccttta 19386645  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 266
Target Start/End: Original strand, 35181513 - 35181541
Alignment:
Q  238 aaaggaaaatgttacatgaacacccttta 266  Q
    |||||||||||||||||||||||||||||    
T  35181513 aaaggaaaatgttacatgaacacccttta 35181541  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 238 - 268
Target Start/End: Complemental strand, 7273438 - 7273408
Alignment:
Q  238 aaaggaaaatgttacatgaacaccctttatt 268  Q
    |||||||||||||||||||||||||||||||    
T  7273438 aaaggaaaatgttacatgaacaccctttatt 7273408  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 238 - 268
Target Start/End: Complemental strand, 26670112 - 26670082
Alignment:
Q  238 aaaggaaaatgttacatgaacaccctttatt 268  Q
    |||||||||||||||||||||||||||||||    
T  26670112 aaaggaaaatgttacatgaacaccctttatt 26670082  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 268
Target Start/End: Complemental strand, 9698434 - 9698406
Alignment:
Q  240 aggaaaatgttacatgaacaccctttatt 268  Q
    |||||||||||||||||||||||||||||    
T  9698434 aggaaaatgttacatgaacaccctttatt 9698406  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 268
Target Start/End: Original strand, 21279928 - 21279956
Alignment:
Q  240 aggaaaatgttacatgaacaccctttatt 268  Q
    |||||||||||||||||||||||||||||    
T  21279928 aggaaaatgttacatgaacaccctttatt 21279956  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 238 - 268
Target Start/End: Original strand, 7617130 - 7617160
Alignment:
Q  238 aaaggaaaatgttacatgaacaccctttatt 268  Q
    |||||||||||||||||||||||||||||||    
T  7617130 aaaggaaaatgttacatgaacaccctttatt 7617160  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 239 - 268
Target Start/End: Original strand, 18033980 - 18034009
Alignment:
Q  239 aaggaaaatgttacatgaacaccctttatt 268  Q
    ||||||||||||||||||||||||||||||    
T  18033980 aaggaaaatgttacatgaacaccctttatt 18034009  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 238 - 268
Target Start/End: Complemental strand, 24688505 - 24688475
Alignment:
Q  238 aaaggaaaatgttacatgaacaccctttatt 268  Q
    |||||||||||||||||||||||||||||||    
T  24688505 aaaggaaaatgttacatgaacaccctttatt 24688475  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 238 - 268
Target Start/End: Original strand, 46941050 - 46941080
Alignment:
Q  238 aaaggaaaatgttacatgaacaccctttatt 268  Q
    |||||||||||||||||||||||||||||||    
T  46941050 aaaggaaaatgttacatgaacaccctttatt 46941080  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 238 - 268
Target Start/End: Complemental strand, 54246251 - 54246221
Alignment:
Q  238 aaaggaaaatgttacatgaacaccctttatt 268  Q
    |||||||||||||||||||||||||||||||    
T  54246251 aaaggaaaatgttacatgaacaccctttatt 54246221  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 239 - 268
Target Start/End: Complemental strand, 47191127 - 47191098
Alignment:
Q  239 aaggaaaatgttacatgaacaccctttatt 268  Q
    ||||||||||||||||||||||||||||||    
T  47191127 aaggaaaatgttacatgaacaccctttatt 47191098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 266
Target Start/End: Complemental strand, 4190368 - 4190340
Alignment:
Q  238 aaaggaaaatgttacatgaacacccttta 266  Q
    |||||||||||||||||||||||||||||    
T  4190368 aaaggaaaatgttacatgaacacccttta 4190340  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 266
Target Start/End: Original strand, 9434121 - 9434149
Alignment:
Q  238 aaaggaaaatgttacatgaacacccttta 266  Q
    |||||||||||||||||||||||||||||    
T  9434121 aaaggaaaatgttacatgaacacccttta 9434149  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 268
Target Start/End: Original strand, 25413680 - 25413708
Alignment:
Q  240 aggaaaatgttacatgaacaccctttatt 268  Q
    |||||||||||||||||||||||||||||    
T  25413680 aggaaaatgttacatgaacaccctttatt 25413708  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 238 - 268
Target Start/End: Complemental strand, 12302356 - 12302326
Alignment:
Q  238 aaaggaaaatgttacatgaacaccctttatt 268  Q
    |||||||||||||||||||||||||||||||    
T  12302356 aaaggaaaatgttacatgaacaccctttatt 12302326  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 268
Target Start/End: Original strand, 30838631 - 30838659
Alignment:
Q  240 aggaaaatgttacatgaacaccctttatt 268  Q
    |||||||||||||||||||||||||||||    
T  30838631 aggaaaatgttacatgaacaccctttatt 30838659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 266
Target Start/End: Original strand, 43114554 - 43114582
Alignment:
Q  238 aaaggaaaatgttacatgaacacccttta 266  Q
    |||||||||||||||||||||||||||||    
T  43114554 aaaggaaaatgttacatgaacacccttta 43114582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 238 - 268
Target Start/End: Original strand, 5489773 - 5489803
Alignment:
Q  238 aaaggaaaatgttacatgaacaccctttatt 268  Q
    |||||||||||||||||||||||||||||||    
T  5489773 aaaggaaaatgttacatgaacaccctttatt 5489803  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 239 - 268
Target Start/End: Original strand, 41861672 - 41861701
Alignment:
Q  239 aaggaaaatgttacatgaacaccctttatt 268  Q
    ||||||||||||||||||||||||||||||    
T  41861672 aaggaaaatgttacatgaacaccctttatt 41861701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 268
Target Start/End: Original strand, 9216301 - 9216329
Alignment:
Q  240 aggaaaatgttacatgaacaccctttatt 268  Q
    |||||||||||||||||||||||||||||    
T  9216301 aggaaaatgttacatgaacaccctttatt 9216329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 266
Target Start/End: Complemental strand, 27535334 - 27535306
Alignment:
Q  238 aaaggaaaatgttacatgaacacccttta 266  Q
    |||||||||||||||||||||||||||||    
T  27535334 aaaggaaaatgttacatgaacacccttta 27535306  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 268
Target Start/End: Complemental strand, 38160695 - 38160667
Alignment:
Q  240 aggaaaatgttacatgaacaccctttatt 268  Q
    |||||||||||||||||||||||||||||    
T  38160695 aggaaaatgttacatgaacaccctttatt 38160667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 266
Target Start/End: Original strand, 40236916 - 40236944
Alignment:
Q  238 aaaggaaaatgttacatgaacacccttta 266  Q
    |||||||||||||||||||||||||||||    
T  40236916 aaaggaaaatgttacatgaacacccttta 40236944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 268
Target Start/End: Complemental strand, 14289 - 14261
Alignment:
Q  240 aggaaaatgttacatgaacaccctttatt 268  Q
    |||||||||||||||||||||||||||||    
T  14289 aggaaaatgttacatgaacaccctttatt 14261  T

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Target: scaffold0187; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 268
Target Start/End: Complemental strand, 24617 - 24589
Alignment:
Q  240 aggaaaatgttacatgaacaccctttatt 268  Q
    |||||||||||||||||||||||||||||    
T  24617 aggaaaatgttacatgaacaccctttatt 24589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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