View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1460_low_6 (Length: 561)
Name: NF1460_low_6
Description: NF1460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1460_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 209 - 411
Target Start/End: Complemental strand, 2524045 - 2523843
Alignment:
| Q |
209 |
gataattagcataaagtgtagaatatcattctataggtcgaaggcaacttatgcatgaccaccatgtagaaccatagccgtcaattcctcctcctgtgcc |
308 |
Q |
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| T |
2524045 |
gataattagcataaagtgtagaatatcatactataggtcgaaggcaacttatgcatgaccaccatgtagaaccatagccgtcaattcctcctcctgtgcc |
2523946 |
T |
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| Q |
309 |
atcaattgtgagaccatttacatattggatcctaatccaacccaacccagatttccatgatttcttaggaggtgcaattattttcccttgaatctacaag |
408 |
Q |
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| T |
2523945 |
atcaattgtgagaccatttacatattggatcctaatccaacccaaccctgatttccatgatttcttaggaggtgcaattattttcccttgaatctacaag |
2523846 |
T |
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| Q |
409 |
tgc |
411 |
Q |
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||| |
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| T |
2523845 |
tgc |
2523843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 17 - 184
Target Start/End: Complemental strand, 2524236 - 2524069
Alignment:
| Q |
17 |
attggggcattaatatataatcgcttaatatcttatttcaataatcttgtaaaatattggttaacttcaacactatttaaatggaagatctataaatact |
116 |
Q |
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| T |
2524236 |
attggggcattaatatataatcgcttaatatcttatttcaataatcttgtaaaatattggttaacttcaacactatttaaatggaagatctataaatact |
2524137 |
T |
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| Q |
117 |
catgttgtgctctataagccttaaagttttttatcaaactctaatgaatcctaaaatccaactcacct |
184 |
Q |
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| T |
2524136 |
catgttgtgctctataagccttaaagttttttatcaaaccctaatgaatcctaaaatccaactcacct |
2524069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 439 - 552
Target Start/End: Complemental strand, 2523815 - 2523703
Alignment:
| Q |
439 |
tgtccgttacagaattgatgctacaatgcatgaatttacaaatagagatggttggaataccccatactttgttttctcaannnnnnnnnnattgttcatg |
538 |
Q |
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| T |
2523815 |
tgtccgttacaga-ttgatgctacaatgcatgaatttacaaatagagatggttggaataccccatactttgttttctcaattttttttttattgttcatg |
2523717 |
T |
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| Q |
539 |
ctaactagtgtctc |
552 |
Q |
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|||||||||||||| |
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| T |
2523716 |
ctaactagtgtctc |
2523703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 242 - 348
Target Start/End: Original strand, 11659108 - 11659217
Alignment:
| Q |
242 |
taggtcgaaggcaacttatgcatgaccaccatgtagaaccatagccgtcaattcctcctcc---tgtgccatcaattgtgagaccatttacatattggat |
338 |
Q |
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| T |
11659108 |
taggtcgagagcaactcttgcatggccaccatgtagaaccattgccgtcgattcctcctccgcctgtgccatcaattgtgacaccgtttacatattggat |
11659207 |
T |
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| Q |
339 |
cctaatccaa |
348 |
Q |
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| |||||||| |
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| T |
11659208 |
cttaatccaa |
11659217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 225 - 348
Target Start/End: Complemental strand, 32923436 - 32923310
Alignment:
| Q |
225 |
tgtagaata-tcattctataggtcgaaggcaacttatgcatgaccaccatgtagaaccatagccgtcaattcctcctcc---tgtgccatcaattgtgag |
320 |
Q |
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||||||||| |||| || |||||| | |||||||| ||||| |||||| |||||||||| ||||| ||||| ||||| |||||||||||||||||| |
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| T |
32923436 |
tgtagaataatcatactctaggtctagggcaacttttgcattgccaccaagtagaaccatggccgttaattcttcctctgcgtgtgccatcaattgtgag |
32923337 |
T |
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| Q |
321 |
accatttacatattggatcctaatccaa |
348 |
Q |
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|||||||||||||||||| ||||||||| |
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| T |
32923336 |
accatttacatattggat-ctaatccaa |
32923310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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