View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1460_low_63 (Length: 248)
Name: NF1460_low_63
Description: NF1460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1460_low_63 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 43540329 - 43540099
Alignment:
| Q |
1 |
tttgactcccaatacaaggttggttatgttaagaatagagatgagatccagaatggcttttcctttgtccttgctctctagaatcaacgtttctgcagtt |
100 |
Q |
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| T |
43540329 |
tttgactcccaatacaaggttggttatgttaagaatagagatgagatccagaatggcttttcctttgtccttgctctctagaatcaacgtttctgcagtt |
43540230 |
T |
|
| Q |
101 |
acctgaaagaacaagaatttagtttaattttggattatagtttttgttgatatcatcatatactttaattaccttggcttcagtgctcagctggatgtac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43540229 |
acctgaaagaacaagaatttagtttaattttggattatagtttttgttgatatcatcatatactttaattaccttggcttcagtgctcagctggatgtac |
43540130 |
T |
|
| Q |
201 |
ttctgcaaaagatctttcctcttattgttaa |
231 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
43540129 |
ttctgcaaaagatctttcctcttattgttaa |
43540099 |
T |
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