View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1460_low_66 (Length: 247)
Name: NF1460_low_66
Description: NF1460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1460_low_66 |
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Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 38818524 - 38818284
Alignment:
| Q |
1 |
cttgctacacgacacgagtctagggtgaagttgaagcagacacggtcaagtaaagtcgactttacaagtgattcaacataccatatctacggatggaaat |
100 |
Q |
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| T |
38818524 |
cttgctacacgacacgagtctagggtgaagttgaagcagacacggtcaagtaaagtcgactttacaagtgattcaacataccatatctacggatggaaat |
38818425 |
T |
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| Q |
101 |
aaaaaaggagaactccgtgcctctttaccatctcattgatgcacatctcggcgagttttgcgaaagtcgtgcgggtcttgaatgggattaggaatctatt |
200 |
Q |
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| T |
38818424 |
aaaaaaggagaactccgtgcctctttaccatcttattgatgcacatctcggcgagtttcgcgaaagtcgtgcgggtcttgaatgggattaggaatctatt |
38818325 |
T |
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| Q |
201 |
ttagtattaactgaatttcggagggagttccaattcatatc |
241 |
Q |
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| T |
38818324 |
ttagtattaactgaatttcggagggagttccaattcatatc |
38818284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 160 - 241
Target Start/End: Original strand, 12363037 - 12363118
Alignment:
| Q |
160 |
gcgaaagtcgtgcgggtcttgaatgggattaggaatctattttagtattaactgaatttcggagggagttccaattcatatc |
241 |
Q |
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| T |
12363037 |
gcgaaactcgtgcgggtcttgaatgggattgggaatcaattttagtattaaccgaatttcggagggggttccaattcatatc |
12363118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 184
Target Start/End: Complemental strand, 12363046 - 12363014
Alignment:
| Q |
152 |
cgagttttgcgaaagtcgtgcgggtcttgaatg |
184 |
Q |
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| T |
12363046 |
cgagtttcgcgaaagtcgtgcgggtcttgaatg |
12363014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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