View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1460_low_7 (Length: 545)
Name: NF1460_low_7
Description: NF1460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1460_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 144; Significance: 2e-75; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 214 - 402
Target Start/End: Original strand, 3984052 - 3984252
Alignment:
| Q |
214 |
atcaatatcaactcatgtattcatccccttccccttccccgtccttgtaatttgttaccataacat------------tattattatttgttttgattgt |
301 |
Q |
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| T |
3984052 |
atcaatatcaactcatgtattcatccccttccccttccccgtccttgtaatttgttaccataacataatatattacattattattatttgttttgattct |
3984151 |
T |
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| Q |
302 |
cttcttattcatcttctcctttatactgtcattatttttaaaactatgaaatcaaatccattaaaaaagtattcaaatataaacaattataccttaattt |
401 |
Q |
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| T |
3984152 |
cttcttattcatcttctcctttatactgtcattatttttaaaactaagaaatcaaatccgttaaaaaagtattcaaatataaacaatgataccttaattt |
3984251 |
T |
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| Q |
402 |
t |
402 |
Q |
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| T |
3984252 |
t |
3984252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 45 - 196
Target Start/End: Original strand, 3983845 - 3983997
Alignment:
| Q |
45 |
atgtttattatgctagctgctagtgtaatggaagtaaaaggcggcacaatgaagaatggtccacttggatctccgacaaatgctccgg-cccaagaccca |
143 |
Q |
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| T |
3983845 |
atgtttattatgctagctgctactttaatggacgtagaaggcggctcaaggaagaatgatccacttgaatcaccgacaggtgctccggtcccaagaccca |
3983944 |
T |
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| Q |
144 |
taattcattgagaaaggcacaattaaagggattgaagaatgagatatctgtaa |
196 |
Q |
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| T |
3983945 |
caattaattgagaaaggtacgattaaagggattgaagaatgagatatttgtaa |
3983997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 480 - 531
Target Start/End: Original strand, 3984279 - 3984330
Alignment:
| Q |
480 |
atacaatcatcatcatcacacaaagaatactcagtgagctgagtatcacacc |
531 |
Q |
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| T |
3984279 |
atacaatcattatcatcacacaaagaatactcagtgagctgagtatcacacc |
3984330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 6e-20; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 214 - 399
Target Start/End: Complemental strand, 741502 - 741311
Alignment:
| Q |
214 |
atcaatatcaactcatgtattcatccccttccccttccccgtccttgtaatttgttaccataa-------cattattattatttgttttgattgtcttct |
306 |
Q |
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| T |
741502 |
atcaatatcaactcatgccctcatccccatcctcttccccttccttgtcatttgttatcataataaatcacattatt-ttaattattttgatcctctttt |
741404 |
T |
|
| Q |
307 |
tattcatcttctcctttatactgtcattatttttaaaactatgaaatcaaatccattaaaaaagtattcaaatataaacaattataccttaat |
399 |
Q |
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| T |
741403 |
tatccatcttgtcctttatattgtcacaatttttaaaattaagaaatcaaatccgttaaaagtgtattcaattgtaaacaatcttaccttaat |
741311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 217 - 402
Target Start/End: Original strand, 797388 - 797579
Alignment:
| Q |
217 |
aatatcaactcatgtattcatccccttccccttccccgtccttgtaatttgttaccataa-------cattattattatttgttttgattgtcttcttat |
309 |
Q |
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| T |
797388 |
aatatcaactcatgtcgtcatccccaacctcttccccttccttgtcatttattaccataataaatcacattatttttatta-ttttgatcctctttttat |
797486 |
T |
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| Q |
310 |
tcatcttctcctttatactgtcattatttttaaaactatgaaatcaaatccattaaaaaagtattcaaatataaacaattataccttaatttt |
402 |
Q |
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| T |
797487 |
ccatcttcttctttatattgtcacaattttttaaattaggaaatcaaatacgttaaaaatgtattcaatgataaacaatcaaaccttaatttt |
797579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 75 - 129
Target Start/End: Original strand, 797211 - 797265
Alignment:
| Q |
75 |
gaagtaaaaggcggcacaatgaagaatggtccacttggatctccgacaaatgctc |
129 |
Q |
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| T |
797211 |
gaagtaaaaggcggttcaaggaagaatggtccacttgaatctccaacaagtgctc |
797265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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