View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1460_low_71 (Length: 242)

Name: NF1460_low_71
Description: NF1460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1460_low_71
NF1460_low_71
[»] chr4 (4 HSPs)
chr4 (1-237)||(54396561-54396797)
chr4 (1-237)||(23587527-23587763)
chr4 (1-237)||(23596379-23596615)
chr4 (165-237)||(35132750-35132822)
[»] chr7 (15 HSPs)
chr7 (112-237)||(8102916-8103041)
chr7 (91-237)||(39985874-39986020)
chr7 (169-237)||(7877527-7877595)
chr7 (10-59)||(8017385-8017434)
chr7 (118-237)||(8602229-8602348)
chr7 (165-236)||(17260543-17260614)
chr7 (119-237)||(8590894-8591012)
chr7 (169-230)||(8382677-8382738)
chr7 (165-237)||(10494168-10494240)
chr7 (193-236)||(6789842-6789885)
chr7 (106-236)||(8585501-8585631)
chr7 (169-226)||(8636148-8636205)
chr7 (196-236)||(1301797-1301837)
chr7 (165-237)||(3147574-3147646)
chr7 (165-237)||(13333250-13333322)
[»] chr2 (6 HSPs)
chr2 (103-237)||(17716487-17716621)
chr2 (28-161)||(5445621-5445754)
chr2 (170-237)||(12234996-12235063)
chr2 (172-237)||(12245200-12245265)
chr2 (193-237)||(7542556-7542600)
chr2 (169-237)||(16657311-16657379)
[»] chr1 (1 HSPs)
chr1 (169-230)||(4678359-4678420)


Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 54396561 - 54396797
Alignment:
Q  1 aagatcccttcttcaatagtaagaagagaaacatcgaaagttccacctcccaagtcaaaaataagcacgttctgttcgccttttctcgaagctttcttat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54396561 aagatcccttcttcaatagtaagaagagaaacatcgaaagttccacctcccaagtcaaaaataagcacgttctgttcgccttttctcgaagctttcttat 54396660  T
Q  101 ccaaaccataagcaattgcagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagcttgacgttgaga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54396661 ccaaaccataagcaattgcagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagcttgacgttgaga 54396760  T
Q  201 atcattgaaataagcaggaacagtaacaacagcattc 237  Q
    |||||||||||||||||||||||||||||||||||||    
T  54396761 atcattgaaataagcaggaacagtaacaacagcattc 54396797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 23587763 - 23587527
Alignment:
Q  1 aagatcccttcttcaatagtaagaagagaaacatcgaaagttccacctcccaagtcaaaaataagcacgttctgttcgccttttctcgaagctttcttat 100  Q
    ||||| ||||| ||||||||||| || |||||||| ||||||||||| || |  || |||||||| |||||||  || ||  | || | |||||||||||    
T  23587763 aagataccttcctcaatagtaagtagggaaacatcaaaagttccaccaccaagatcgaaaataagaacgttcttctcacccgtgcttgtagctttcttat 23587664  T
Q  101 ccaaaccataagcaattgcagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagcttgacgttgaga 200  Q
    | | |||||||||||| |||||||| ||||| ||||||||||| ||||||||||| |  || |||||  |||| |||||||| |||||||||||||| ||    
T  23587663 caagaccataagcaatagcagcagcggtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagcttgacgttgtga 23587564  T
Q  201 atcattgaaataagcaggaacagtaacaacagcattc 237  Q
    ||| ||||| |||||||| ||||| ||||| ||||||    
T  23587563 atcgttgaagtaagcaggcacagttacaacggcattc 23587527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 23596615 - 23596379
Alignment:
Q  1 aagatcccttcttcaatagtaagaagagaaacatcgaaagttccacctcccaagtcaaaaataagcacgttctgttcgccttttctcgaagctttcttat 100  Q
    ||||| ||||| |||||||||||||| |||||||| ||||||||||| || |  || |||||||| |||||||  || ||  | || | |||||||||||    
T  23596615 aagataccttcctcaatagtaagaagtgaaacatcaaaagttccaccaccaagatcgaaaataagaacgttcttctcaccagtacttgtagctttcttat 23596516  T
Q  101 ccaaaccataagcaattgcagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagcttgacgttgaga 200  Q
    | | |||||||||||| || |||||||| ||||| |||||||| |||| |||||| |  || |||||  |||||||||| || |||||||||||||| ||    
T  23596515 caagaccataagcaatagcggcagcagtgggctcgttaataattctcatcacattgagtccagaaatgacaccagcatccttagtagcttgacgttgtga 23596416  T
Q  201 atcattgaaataagcaggaacagtaacaacagcattc 237  Q
    ||| ||||| || ||||| || || ||||| ||||||    
T  23596415 atcgttgaagtatgcaggcacggttacaacggcattc 23596379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 165 - 237
Target Start/End: Original strand, 35132750 - 35132822
Alignment:
Q  165 aatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattc 237  Q
    |||||||||||||||| | || ||||  |||||||||||| | ||||||||||| ||||||||||| ||||||    
T  35132750 aatagcaccagcatctatagtggcttttcgttgagaatcactaaaataagcaggcacagtaacaactgcattc 35132822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 112 - 237
Target Start/End: Original strand, 8102916 - 8103041
Alignment:
Q  112 gcaattgcagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagcttgacgttgagaatcattgaaat 211  Q
    ||||| ||||||||||| |||||||||||||| ||||| ||||| ||||| |  ||| ||||||||||||| || |||||||| |||||||||||||| |    
T  8102916 gcaatagcagcagcagttggctcattaataattctcaaaacatttaaaccagcgataacaccagcatctttagttgcttgacgctgagaatcattgaagt 8103015  T
Q  212 aagcaggaacagtaacaacagcattc 237  Q
    ||||||| ||||| || || ||||||    
T  8103016 aagcagggacagtgacgacggcattc 8103041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 91 - 237
Target Start/End: Original strand, 39985874 - 39986020
Alignment:
Q  91 gctttcttatccaaaccataagcaattgcagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagctt 190  Q
    |||||||| || | |||||||||||| ||||||||||| |||||||| ||||| | ||  ||||| | ||| | |||| | |||||||| || |||||||    
T  39985874 gctttcttgtcaagaccataagcaatggcagcagcagtgggctcattgataattcgcatgacattaagaccggcaataactccagcatccttggtagctt 39985973  T
Q  191 gacgttgagaatcattgaaataagcaggaacagtaacaacagcattc 237  Q
    |||| || || ||||| || |||||||| ||||||||||||||||||    
T  39985974 gacgctgggagtcattaaagtaagcagggacagtaacaacagcattc 39986020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 169 - 237
Target Start/End: Complemental strand, 7877595 - 7877527
Alignment:
Q  169 gcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattc 237  Q
    |||||||||||||| || ||||  ||||||||||||||||||||||| || ||||||||||| ||||||    
T  7877595 gcaccagcatcttttgtggcttttcgttgagaatcattgaaataagccggcacagtaacaactgcattc 7877527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 8017434 - 8017385
Alignment:
Q  10 tcttcaatagtaagaagagaaacatcgaaagttccacctcccaagtcaaa 59  Q
    |||||||||||||||||||| ||||| ||||| |||||||||||||||||    
T  8017434 tcttcaatagtaagaagagacacatcaaaagtaccacctcccaagtcaaa 8017385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 237
Target Start/End: Original strand, 8602229 - 8602348
Alignment:
Q  118 gcagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcag 217  Q
    ||||| ||||| |||||||| || |||| ||  ||||| | ||| | ||| |||||||||||||| || ||||  || ||||||||||| |||||||| |    
T  8602229 gcagctgcagttggctcattgattatccgcattacattgagaccagcaatggcaccagcatcttttgtggcttttcgctgagaatcattaaaataagccg 8602328  T
Q  218 gaacagtaacaacagcattc 237  Q
    | ||||||||||| ||||||    
T  8602329 gcacagtaacaactgcattc 8602348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 236
Target Start/End: Original strand, 17260543 - 17260614
Alignment:
Q  165 aatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcatt 236  Q
    |||| ||||||||||| | || ||||  || ||||||||||||||||||||||||||||||| |||| ||||    
T  17260543 aataacaccagcatctatggtggcttttcgctgagaatcattgaaataagcaggaacagtaataacaacatt 17260614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 119 - 237
Target Start/End: Original strand, 8590894 - 8591012
Alignment:
Q  119 cagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcagg 218  Q
    |||| ||||| || |||||||| |||| ||  |||||||| || | |||  ||||||||||||| |||||||  |  ||||||||||| |||||||| ||    
T  8590894 cagcggcagttggttcattaattatccgcattacattcaagccagcaatgacaccagcatctttggtagctttcctctgagaatcattaaaataagctgg 8590993  T
Q  219 aacagtaacaacagcattc 237  Q
     ||||||||||| ||||||    
T  8590994 cacagtaacaactgcattc 8591012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 230
Target Start/End: Complemental strand, 8382738 - 8382677
Alignment:
Q  169 gcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaac 230  Q
    |||||||||||||| || ||||  |||||||||||||||||||| ||||| || ||||||||    
T  8382738 gcaccagcatcttttgtggctttccgttgagaatcattgaaatatgcaggcacggtaacaac 8382677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 237
Target Start/End: Complemental strand, 10494240 - 10494168
Alignment:
Q  165 aatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattc 237  Q
    |||||||||||||||  | ||||| |  ||||||||||| ||||| ||||| || ||||||||||||||||||    
T  10494240 aatagcaccagcatcaatagtagcctttcgttgagaatcgttgaagtaagccggcacagtaacaacagcattc 10494168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 193 - 236
Target Start/End: Original strand, 6789842 - 6789885
Alignment:
Q  193 cgttgagaatcattgaaataagcaggaacagtaacaacagcatt 236  Q
    |||||||||||||||||||||||||| ||||||| ||| |||||    
T  6789842 cgttgagaatcattgaaataagcaggcacagtaataactgcatt 6789885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 236
Target Start/End: Complemental strand, 8585631 - 8585501
Alignment:
Q  106 ccataagcaattgcagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagcttgacgttgagaatcat 205  Q
    ||||| ||||| || |||||||| || ||||| || |||||||  ||||| |  || | ||| |||||||||||  | || ||||  || ||||||||||    
T  8585631 ccatatgcaatagctgcagcagtgggttcattgattatcctcataacattaaggccagcaatggcaccagcatccatggtggcttttcgctgagaatcat 8585532  T
Q  206 tgaaataagcaggaacagtaacaacagcatt 236  Q
    ||||||||||||| ||||| ||||| |||||    
T  8585531 tgaaataagcaggcacagtcacaactgcatt 8585501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 226
Target Start/End: Complemental strand, 8636205 - 8636148
Alignment:
Q  169 gcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaa 226  Q
    |||||||||||||| || | || ||| |||||||||||||||||||| || |||||||    
T  8636205 gcaccagcatctttggtggatttacgctgagaatcattgaaataagcgggcacagtaa 8636148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 236
Target Start/End: Original strand, 1301797 - 1301837
Alignment:
Q  196 tgagaatcattgaaataagcaggaacagtaacaacagcatt 236  Q
    ||||||||||||||||  ||||| |||||||||||||||||    
T  1301797 tgagaatcattgaaatgtgcaggcacagtaacaacagcatt 1301837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 237
Target Start/End: Original strand, 3147574 - 3147646
Alignment:
Q  165 aatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattc 237  Q
    |||| ||||||||||| | || ||||  || |||| |||||||||||||||||| || |||||||| ||||||    
T  3147574 aataacaccagcatctattgtcgctttccgctgagcatcattgaaataagcaggtacggtaacaactgcattc 3147646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 237
Target Start/End: Complemental strand, 13333322 - 13333250
Alignment:
Q  165 aatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattc 237  Q
    |||||||||||||||| | || || |  || |||||||||||||| ||||| || ||||||||||| ||||||    
T  13333322 aatagcaccagcatctatggtggcctttcgctgagaatcattgaagtaagccggcacagtaacaacggcattc 13333250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 103 - 237
Target Start/End: Complemental strand, 17716621 - 17716487
Alignment:
Q  103 aaaccataagcaattgcagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagcttgacgttgagaat 202  Q
    |||||||||||||| || |||||||| |||||||||||||| ||||  | ||| | ||| | ||||||||||||||  || |||||||| |  ||||||     
T  17716621 aaaccataagcaatggctgcagcagtgggctcattaataattctcatgaaattaagaccagcaatagcaccagcatgcttagtagcttgtctctgagaaa 17716522  T
Q  203 cattgaaataagcaggaacagtaacaacagcattc 237  Q
     ||| || |||||||| ||||||||||| ||||||    
T  17716521 aattaaagtaagcagggacagtaacaacggcattc 17716487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 161
Target Start/End: Complemental strand, 5445754 - 5445621
Alignment:
Q  28 gaaacatcgaaagttccacctcccaagtcaaaaataagcacgttctgttcgccttttctcgaagctttcttatccaaaccataagcaattgcagcagcag 127  Q
    ||||||||||| |||||||| || |  ||||| | |||||| ||||  || |||| |||| |   |||||| ||||||||||||||||| ||||| ||||    
T  5445754 gaaacatcgaatgttccaccaccaagatcaaacacaagcacattcttctcaccttctctccacattttcttgtccaaaccataagcaatagcagctgcag 5445655  T
Q  128 taggctcattaataatcctcaacacattcaaacc 161  Q
    ||||||| || || ||||||| |||||| |||||    
T  5445654 taggctcgttgatgatcctcatcacattaaaacc 5445621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 237
Target Start/End: Original strand, 12234996 - 12235063
Alignment:
Q  170 caccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattc 237  Q
    ||||||||||| | || ||||  |||||||||||||||||||||||||| || |||||||| ||||||    
T  12234996 caccagcatctatagttgcttttcgttgagaatcattgaaataagcaggcacggtaacaactgcattc 12235063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 237
Target Start/End: Complemental strand, 12245265 - 12245200
Alignment:
Q  172 ccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattc 237  Q
    ||||||||| |||| ||||  || ||||||||| | ||||||||||| ||||||||||||||||||    
T  12245265 ccagcatctatcgttgcttttcgctgagaatcactaaaataagcaggtacagtaacaacagcattc 12245200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 237
Target Start/End: Original strand, 7542556 - 7542600
Alignment:
Q  193 cgttgagaatcattgaaataagcaggaacagtaacaacagcattc 237  Q
    |||||||||||||| ||||||||||| ||||||||||| ||||||    
T  7542556 cgttgagaatcattaaaataagcaggtacagtaacaactgcattc 7542600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 237
Target Start/End: Complemental strand, 16657379 - 16657311
Alignment:
Q  169 gcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattc 237  Q
    |||||||||||| | || ||||  || || ||||||||||| ||||| || ||||||||||||||||||    
T  16657379 gcaccagcatctatggtggcttttcgctgcgaatcattgaagtaagctggcacagtaacaacagcattc 16657311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 230
Target Start/End: Complemental strand, 4678420 - 4678359
Alignment:
Q  169 gcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaac 230  Q
    |||||||||||| | |||||||  ||||||||||||||||| || ||||| |||||||||||    
T  4678420 gcaccagcatctatggtagcttttcgttgagaatcattgaagtatgcaggcacagtaacaac 4678359  T

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