View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1460_low_72 (Length: 239)
Name: NF1460_low_72
Description: NF1460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1460_low_72 |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 19441971 - 19442191
Alignment:
| Q |
19 |
atgaggtgctgacgtttctttgacatggaaagatgtttcttggcaaatacgaaatcatctgagattagagcattccatgacttgcaaacgcagcggattt |
118 |
Q |
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| T |
19441971 |
atgaggtgctgacgtttctttgacatggaaagatgtttcttggcgaatacgaaatcatctgagattagagcattccacgacttgcaaacgcagcggattt |
19442070 |
T |
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| Q |
119 |
gttggaggacattgacgggtagcctacataggatttcggctaagagatccaacggaatatatatcaacggcgcagcgtgacgtggctgttttgtggtgac |
218 |
Q |
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| T |
19442071 |
gttggaggactttgacgggtagcctacataggatttcggctaagagatccaatggaatatatatcaacggtgcagcgtgaagtggctgttttgtggtgac |
19442170 |
T |
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| Q |
219 |
gccagtttccttcgtcagtgg |
239 |
Q |
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| T |
19442171 |
gccagtttccttcgtcagtgg |
19442191 |
T |
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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 178
Target Start/End: Original strand, 23896904 - 23897003
Alignment:
| Q |
79 |
gagattagagcattccatgacttgcaaacgcagcggatttgttggaggacattgacgggtagcctacataggatttcggctaagagatccaacggaatat |
178 |
Q |
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| T |
23896904 |
gagattagagaattccatgacttgcagacgcagcggaattgtaggaggaacttgacagggagtctgcacaggatttcaaccacgagatcaaacggaatat |
23897003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 115
Target Start/End: Original strand, 25869446 - 25869489
Alignment:
| Q |
72 |
atcatctgagattagagcattccatgacttgcaaacgcagcgga |
115 |
Q |
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| T |
25869446 |
atcatttgagattagagaattccatgacttgcaaatgcagcgga |
25869489 |
T |
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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 11032216 - 11032168
Alignment:
| Q |
72 |
atcatctgagattagagcattccatgacttgcaaacgcagcggatttgt |
120 |
Q |
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| T |
11032216 |
atcatctgagattagagtattccatgatttgcatacgcagcggagttgt |
11032168 |
T |
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Target: scaffold0015 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 127
Target Start/End: Original strand, 41134 - 41189
Alignment:
| Q |
72 |
atcatctgagattagagcattccatgacttgcaaacgcagcggatttgttggagga |
127 |
Q |
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| T |
41134 |
atcatttgagattagagaattccatgacttgcagacgcaacggaattgtaggagga |
41189 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 110
Target Start/End: Complemental strand, 24390674 - 24390645
Alignment:
| Q |
81 |
gattagagcattccatgacttgcaaacgca |
110 |
Q |
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| T |
24390674 |
gattagagcattccatgacttgcaaacgca |
24390645 |
T |
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