View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1460_low_8 (Length: 514)

Name: NF1460_low_8
Description: NF1460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1460_low_8
NF1460_low_8
[»] chr7 (4 HSPs)
chr7 (14-499)||(35375429-35375914)
chr7 (36-152)||(5726986-5727102)
chr7 (59-139)||(29264599-29264678)
chr7 (110-146)||(5747892-5747928)
[»] chr2 (6 HSPs)
chr2 (49-182)||(41931463-41931596)
chr2 (18-89)||(22398434-22398505)
chr2 (18-89)||(22968849-22968920)
chr2 (62-133)||(18690754-18690825)
chr2 (111-182)||(34415451-34415522)
chr2 (61-106)||(10130813-10130858)
[»] chr1 (6 HSPs)
chr1 (63-125)||(12729525-12729587)
chr1 (70-145)||(42293639-42293713)
chr1 (54-140)||(32056617-32056703)
chr1 (101-144)||(34385787-34385830)
chr1 (105-151)||(32743946-32743991)
chr1 (38-140)||(39155954-39156056)
[»] chr5 (3 HSPs)
chr5 (37-148)||(13063380-13063491)
chr5 (42-152)||(17365535-17365643)
chr5 (109-182)||(27689824-27689897)
[»] chr4 (8 HSPs)
chr4 (27-149)||(38943069-38943191)
chr4 (70-149)||(16972756-16972835)
chr4 (38-143)||(17766014-17766119)
chr4 (53-108)||(11883532-11883587)
chr4 (63-149)||(25578070-25578156)
chr4 (54-122)||(18825743-18825811)
chr4 (109-149)||(27059415-27059455)
chr4 (110-140)||(56335552-56335582)
[»] chr3 (5 HSPs)
chr3 (37-133)||(26719608-26719704)
chr3 (34-148)||(36599445-36599559)
chr3 (36-149)||(30603468-30603581)
chr3 (36-140)||(33425978-33426082)
chr3 (89-148)||(40964995-40965055)
[»] scaffold0027 (1 HSPs)
scaffold0027 (36-139)||(1216-1319)
[»] chr8 (2 HSPs)
chr8 (59-138)||(24735465-24735544)
chr8 (37-125)||(2287609-2287697)
[»] scaffold0362 (1 HSPs)
scaffold0362 (105-151)||(10659-10705)
[»] chr6 (1 HSPs)
chr6 (70-149)||(9437432-9437512)


Alignment Details
Target: chr7 (Bit Score: 462; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 14 - 499
Target Start/End: Complemental strand, 35375914 - 35375429
Alignment:
Q  14 atatacagattgaatttccccatattgtagtacactgcatctagtttagtgttcatatctactggataattgttcatgattttgtgatgtggtttgcaaa 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35375914 atatacagattgaatttccccatattgtagtacactgcatctagtttagtgttcatatctactggataattgttcatgattttgtgatgtggtttgcaaa 35375815  T
Q  114 tgaaccaaacacacaaatttatagaaggttttgtgcattctagatcacaaaaaatgttagtgcaatgtgaagaagaagaaaaatgcgtttaactagtttt 213  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35375814 tgaaccaaacacacaaatttatagaaggttttgtgcattgtagatcacaaaaaatgttagtgcaatgtgaagaagaagaaaaatgcgtttaactagtttt 35375715  T
Q  214 agaaaagtgatttagtttagttattggccatgtcagacagttgaactaatttccgcataatttgttccattaagaccggagtttaacattgttgcatata 313  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||     
T  35375714 agaaaagtgatttagttcagttattggccatgtcagacaggtgaactaatttccgcataatttgttccattaagactggagtttaacattgttgcatatg 35375615  T
Q  314 tttgtgtgtctatgttacaccccgccactaatctaataactctcgattatcatgatgaagtacacttcacattttaaggatctaggtagggttaaaagag 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35375614 tttgtgtgtctatgttacaccccgccactaatctaataactctcgattatcatgatgaagtacacttcacattttaaggatctaggtagggttaaaagag 35375515  T
Q  414 acattgacaacaattattgttttaaaaatcaagtcgatgatagatttggtaaagttgttagtcgaacaacttagcatgtgtttagt 499  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35375514 acattgacaacaattattgttttaaaaatcaagttgatgatagatttggtaaagttgttagtcgaacaacttagcatgtgtttagt 35375429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 36 - 152
Target Start/End: Original strand, 5726986 - 5727102
Alignment:
Q  36 tattgtagtacactgcatctagtttagtgttcatatctactggataattgttcatgattttgtgatgtggtttgcaaatgaaccaaacacacaaatttat 135  Q
    |||||||||| |||  | |||| ||| |||| ||||||||||| ||| |||| ||| ||||||| ||||||||||||||  ||||||| ||| |||||||    
T  5726986 tattgtagtaaactaaaactagcttaatgtttatatctactgggtaagtgttaatggttttgtggtgtggtttgcaaatttaccaaacgcactaatttat 5727085  T
Q  136 agaaggttttgtgcatt 152  Q
    | |||||||||||||||    
T  5727086 ataaggttttgtgcatt 5727102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 59 - 139
Target Start/End: Complemental strand, 29264678 - 29264599
Alignment:
Q  59 ttagtgttcatatctactggataattgttcatgattttgtgatgtggtttgcaaatgaaccaaacacacaaatttatagaa 139  Q
    |||||||||||||||| | ||||| |||| ||| ||||||| ||||||||||||||||| ||||||||| |||||| ||||    
T  29264678 ttagtgttcatatctattagataagtgtt-atggttttgtggtgtggtttgcaaatgaatcaaacacactaatttaaagaa 29264599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 146
Target Start/End: Complemental strand, 5747928 - 5747892
Alignment:
Q  110 caaatgaaccaaacacacaaatttatagaaggttttg 146  Q
    |||||||||||||||||| |||||||||||| |||||    
T  5747928 caaatgaaccaaacacaccaatttatagaagtttttg 5747892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 9e-22; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 49 - 182
Target Start/End: Original strand, 41931463 - 41931596
Alignment:
Q  49 tgcatctagtttagtgttcatatctactggataattgttcatgattttgtgatgtggtttgcaaatgaaccaaacacacaaatttatagaaggttttgtg 148  Q
    |||| |||||||| |||| ||||| |||| |||| |||||||| ||||||  |||||||||||||||||||||||  |||||||||| |||| | |||||    
T  41931463 tgcaactagtttaatgtttatatcaactgaataagtgttcatggttttgttgtgtggtttgcaaatgaaccaaacgtacaaatttattgaagttattgtg 41931562  T
Q  149 cattctagatcacaaaaaatgttagtgcaatgtg 182  Q
    |||  | || |||||||| |||| ||||||||||    
T  41931563 catcgtggagcacaaaaattgttggtgcaatgtg 41931596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 22398434 - 22398505
Alignment:
Q  18 acagattgaatttccccatattgtagtacactgcatctagtttagtgttcatatctactggataattgttca 89  Q
    ||||||||  ||||||||| |||||||||| ||||||||  ||||| ||||| |||||| ||||||||||||    
T  22398434 acagattgggtttccccatgttgtagtacattgcatctaacttagtattcatttctacttgataattgttca 22398505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 22968849 - 22968920
Alignment:
Q  18 acagattgaatttccccatattgtagtacactgcatctagtttagtgttcatatctactggataattgttca 89  Q
    ||||||||  ||||||||| |||||||||| ||||||||  ||||| ||||| |||||| ||||||||||||    
T  22968849 acagattgggtttccccatgttgtagtacattgcatctaacttagtattcatttctacttgataattgttca 22968920  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 62 - 133
Target Start/End: Original strand, 18690754 - 18690825
Alignment:
Q  62 gtgttcatatctactggataattgttcatgattttgtgatgtggtttgcaaatgaaccaaacacacaaattt 133  Q
    ||||||| ||||| ||||| | |||||||| |||||||  |||||| | ||||||||||||||||| |||||    
T  18690754 gtgttcaaatctattggatcagtgttcatggttttgtggcgtggttggaaaatgaaccaaacacaccaattt 18690825  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 111 - 182
Target Start/End: Complemental strand, 34415522 - 34415451
Alignment:
Q  111 aaatgaaccaaacacacaaatttatagaaggttttgtgcattctagatcacaaaaaatgttagtgcaatgtg 182  Q
    ||||||||||||||||| |||||||||||| |||||||| |  | || |||| ||| |||| ||||||||||    
T  34415522 aaatgaaccaaacacactaatttatagaagtttttgtgcgtcgtggaccacagaaattgttggtgcaatgtg 34415451  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 106
Target Start/End: Complemental strand, 10130858 - 10130813
Alignment:
Q  61 agtgttcatatctactggataattgttcatgattttgtgatgtggt 106  Q
    |||||||||||||||| ||||| ||||||||||| |||| ||||||    
T  10130858 agtgttcatatctactagataagtgttcatgattatgtggtgtggt 10130813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 63 - 125
Target Start/End: Complemental strand, 12729587 - 12729525
Alignment:
Q  63 tgttcatatctactggataattgttcatgattttgtgatgtggtttgcaaatgaaccaaacac 125  Q
    |||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  12729587 tgttcatatctattggataagtgttcatggttttgtgatgtggtttgcaaatgaaccaaacac 12729525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 70 - 145
Target Start/End: Complemental strand, 42293713 - 42293639
Alignment:
Q  70 atctactggataattgttcatgattttgtgatgtggtttgcaaatgaaccaaacacacaaatttatagaaggtttt 145  Q
    ||||||| ||||| | |||||||||||||| |||||||| |||||||||||||||||| |||||||||||| ||||    
T  42293713 atctactagataaatattcatgattttgtggtgtggttt-caaatgaaccaaacacaccaatttatagaagttttt 42293639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 54 - 140
Target Start/End: Original strand, 32056617 - 32056703
Alignment:
Q  54 ctagtttagtgttcatatctactggataattgttcatgattttgtgatgtggtttgcaaatgaaccaaacacacaaatttatagaag 140  Q
    |||||||||||||||||| || | ||||| |||||||  || |||  |||||||| |||||||||||||||| | ||||||||||||    
T  32056617 ctagtttagtgttcatatttatttgataagtgttcattgttgtgtcgtgtggttttcaaatgaaccaaacacgccaatttatagaag 32056703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 101 - 144
Target Start/End: Complemental strand, 34385830 - 34385787
Alignment:
Q  101 tgtggtttgcaaatgaaccaaacacacaaatttatagaaggttt 144  Q
    |||||||||||||||||||||||||| ||| |||||||||||||    
T  34385830 tgtggtttgcaaatgaaccaaacacataaacttatagaaggttt 34385787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 105 - 151
Target Start/End: Complemental strand, 32743991 - 32743946
Alignment:
Q  105 gtttgcaaatgaaccaaacacacaaatttatagaaggttttgtgcat 151  Q
    |||||||||||||||||||| | ||||| ||||||||||||||||||    
T  32743991 gtttgcaaatgaaccaaacaaataaatt-atagaaggttttgtgcat 32743946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 38 - 140
Target Start/End: Complemental strand, 39156056 - 39155954
Alignment:
Q  38 ttgtagtacactgcatctagtttagtgttcatatctactggataattgttcatgattttgtgatgtggtttgcaaatgaaccaaacacacaaatttatag 137  Q
    |||||||| |||||| ||||  | ||||| | ||||| ||||||| ||| |||||||||| | |||| |||||||||||||  ||||| | | |||||||    
T  39156056 ttgtagtaaactgcaactagcatggtgtttacatctattggataagtgtccatgattttgcggtgtgatttgcaaatgaacagaacactctactttatag 39155957  T
Q  138 aag 140  Q
    |||    
T  39155956 aag 39155954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 8e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 37 - 148
Target Start/End: Original strand, 13063380 - 13063491
Alignment:
Q  37 attgtagtacactgcatctagtttagtgttcatatctactggataattgttcatgattttgtgatgtggtttgcaaatgaaccaaacacacaaatttata 136  Q
    |||||||||  ||||| |||| || ||||| ||||||| ||||||| |||| ||| || |||| ||||||||||||||||||  |||| || ||||||||    
T  13063380 attgtagtaacctgcaactagcttggtgtttatatctattggataaatgttaatggttatgtggtgtggtttgcaaatgaacttaacaaaccaatttata 13063479  T
Q  137 gaaggttttgtg 148  Q
    ||||||| ||||    
T  13063480 gaaggttatgtg 13063491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 42 - 152
Target Start/End: Complemental strand, 17365643 - 17365535
Alignment:
Q  42 agtacactgcatctagtttagtgttcatatctactggataattgttcatgattttgtgatgtggtttgcaaatgaaccaaacacacaaatttatagaagg 141  Q
    |||||||| || ||||||| ||||| | ||| ||| ||||| |||||||| || |||  |||||||| |||||||||||||||| | |||||||||||      
T  17365643 agtacactacaactagtttggtgtttacatcaactagataagtgttcatggttatgt--tgtggtttacaaatgaaccaaacaccccaatttatagaatt 17365546  T
Q  142 ttttgtgcatt 152  Q
    ||| |||||||    
T  17365545 tttggtgcatt 17365535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 182
Target Start/End: Complemental strand, 27689897 - 27689824
Alignment:
Q  109 gcaaatgaaccaaacacacaaatttatagaaggttttgtgcattctagatcacaaaaaatgttagtgcaatgtg 182  Q
    ||||||||| |||||||||  ||||||||||| |||||||| |  | || |||||||| ||| |||||||||||    
T  27689897 gcaaatgaatcaaacacacttatttatagaagtttttgtgcgtcgtggaccacaaaaactgtcagtgcaatgtg 27689824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 27 - 149
Target Start/End: Original strand, 38943069 - 38943191
Alignment:
Q  27 atttccccatattgtagtacactgcatctagtttagtgttcatatctactggataattgttcatgattttgtgatgtggtttgcaaatgaaccaaacaca 126  Q
    |||| ||||| |||||||||  |||| |||| || |||||||| ||||||| |||| |||  ||| || |||| | |   ||||||||||||||||||||    
T  38943069 attttcccatgttgtagtacgttgcagctagcttggtgttcatttctactgaataaatgtcaatggttatgtggtctacattgcaaatgaaccaaacaca 38943168  T
Q  127 caaatttatagaaggttttgtgc 149  Q
    | |||||||||||||||||||||    
T  38943169 ccaatttatagaaggttttgtgc 38943191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 70 - 149
Target Start/End: Original strand, 16972756 - 16972835
Alignment:
Q  70 atctactggataattgttcatgattttgtgatgtggtttgcaaatgaaccaaacacacaaatttatagaaggttttgtgc 149  Q
    ||||||||||||| ||||||   ||||||| ||||||||||||||||||||||||||| ||| |||| ||| || |||||    
T  16972756 atctactggataagtgttcacagttttgtggtgtggtttgcaaatgaaccaaacacaccaatatatataagtttatgtgc 16972835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 38 - 143
Target Start/End: Original strand, 17766014 - 17766119
Alignment:
Q  38 ttgtagtacactgcatctagtttagtgttcatatctactggataattgttcatgattttgtgatgtggtttgcaaatgaaccaaacacacaaatttatag 137  Q
    |||||||| |||||| |||| ||| | |||||||||| |   ||| |||||||| ||| ||| |||||||||||||||||| |||||| | ||||||||     
T  17766014 ttgtagtaaactgcaactagcttaatcttcatatctatttagtaagtgttcatggtttcgtgttgtggtttgcaaatgaacaaaacacgccaatttataa 17766113  T
Q  138 aaggtt 143  Q
    ||||||    
T  17766114 aaggtt 17766119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 53 - 108
Target Start/End: Original strand, 11883532 - 11883587
Alignment:
Q  53 tctagtttagtgttcatatctactggataattgttcatgattttgtgatgtggttt 108  Q
    |||||||| ||||| | ||||||||||||| |||||||||||||||| ||||||||    
T  11883532 tctagtttggtgtttacatctactggataagtgttcatgattttgtggtgtggttt 11883587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 63 - 149
Target Start/End: Original strand, 25578070 - 25578156
Alignment:
Q  63 tgttcatatctactggataattgttcatgattttgtgatgtggtttgcaaatgaaccaaacacacaaatttatagaaggttttgtgc 149  Q
    ||||||| |||| ||||||| |||||||| ||| ||| | |||  |||||||||||||||||||  |||||||| || |||||||||    
T  25578070 tgttcatttctaatggataaatgttcatggtttagtggtatggagtgcaaatgaaccaaacacattaatttataaaaagttttgtgc 25578156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 54 - 122
Target Start/End: Complemental strand, 18825811 - 18825743
Alignment:
Q  54 ctagtttagtgttcatatctactggataattgttcatgattttgtgatgtggtttgcaaatgaaccaaa 122  Q
    |||| ||||||||||||||||| | |||  |||||||| || |||| ||| ||||||||||||||||||    
T  18825811 ctagcttagtgttcatatctacggtatacgtgttcatggttatgtggtgttgtttgcaaatgaaccaaa 18825743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 27059455 - 27059415
Alignment:
Q  109 gcaaatgaaccaaacacacaaatttatagaaggttttgtgc 149  Q
    ||||||||||||||||||| |||||||||||| ||||||||    
T  27059455 gcaaatgaaccaaacacaccaatttatagaagtttttgtgc 27059415  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 110 - 140
Target Start/End: Original strand, 56335552 - 56335582
Alignment:
Q  110 caaatgaaccaaacacacaaatttatagaag 140  Q
    |||||||||||||||||||||||||||||||    
T  56335552 caaatgaaccaaacacacaaatttatagaag 56335582  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 37 - 133
Target Start/End: Complemental strand, 26719704 - 26719608
Alignment:
Q  37 attgtagtacactgcatctagtttagtgttcatatctactggataattgttcatgattttgtgatgtggtttgcaaatgaaccaaacacacaaattt 133  Q
    ||||||||| ||| || |||| |||||||||||||||||| ||||| |||||| | || | ||| ||| |||| ||||||||||||||||| |||||    
T  26719704 attgtagtaaactacaactagcttagtgttcatatctactagataagtgttcaaggttctatgacgtgatttgaaaatgaaccaaacacaccaattt 26719608  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 34 - 148
Target Start/End: Complemental strand, 36599559 - 36599445
Alignment:
Q  34 catattgtagtacactgcatctagtttagtgttcatatctactggataattgttcatgattttgtgatgtggtttgcaaatgaaccaaacacacaaattt 133  Q
    ||||||||||| || |||| |||| ||||| |||||||||| || |||| |||||  | || ||||  |||||| |||||||||   |||||||||||||    
T  36599559 catattgtagttcattgcacctagcttagtattcatatctaatgaataagtgttctcggttatgtggcgtggttagcaaatgaattgaacacacaaattt 36599460  T
Q  134 atagaaggttttgtg 148  Q
    |||||| ||||||||    
T  36599459 atagaatgttttgtg 36599445  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 36 - 149
Target Start/End: Complemental strand, 30603581 - 30603468
Alignment:
Q  36 tattgtagtacactgcatctagtttagtgttcatatctactggataattgttcatgattttgtgatgtggtttgcaaatgaaccaaacacacaaatttat 135  Q
    |||||||||||| ||   |||| || ||||||| ||||||| ||||  ||||||||  ||| || ||||| || ||||||||| |||||||| |||||||    
T  30603581 tattgtagtacaatgtggctaggttcgtgttcacatctactagatacgtgttcatgtatttatggtgtggattacaaatgaacaaaacacactaatttat 30603482  T
Q  136 agaaggttttgtgc 149  Q
    ||||| || |||||    
T  30603481 agaagtttatgtgc 30603468  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 36 - 140
Target Start/End: Original strand, 33425978 - 33426082
Alignment:
Q  36 tattgtagtacactgcatctagtttagtgttcatatctactggataattgttcatgattttgtgatgtggtttgcaaatgaaccaaacacacaaatttat 135  Q
    |||||||||| ||||||  ||  || || |||| || ||||| |||| |||||||||||||||  |||||||   |||||||| |||||||| |||||||    
T  33425978 tattgtagtaaactgcagttaacttggtattcagatttactgaataagtgttcatgattttgttgtgtggttcttaaatgaacgaaacacaccaatttat 33426077  T
Q  136 agaag 140  Q
    |||||    
T  33426078 agaag 33426082  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 89 - 148
Target Start/End: Original strand, 40964995 - 40965055
Alignment:
Q  89 atgattttgtgatgtgg-tttgcaaatgaaccaaacacacaaatttatagaaggttttgtg 148  Q
    ||||||||||| ||||  ||||||| ||||| |||||||| ||||||||||||||||||||    
T  40964995 atgattttgtggtgtgtatttgcaattgaactaaacacaccaatttatagaaggttttgtg 40965055  T

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Target: scaffold0027 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 36 - 139
Target Start/End: Complemental strand, 1319 - 1216
Alignment:
Q  36 tattgtagtacactgcatctagtttagtgttcatatctactggataattgttcatgattttgtgatgtggtttgcaaatgaaccaaacacacaaatttat 135  Q
    |||||||||| ||| || |||| ||| | |||||||||| || |||| ||||||||||| | ||||||| ||| |||||||| |||||||   |||||||    
T  1319 tattgtagtaaactacaactagcttattattcatatctattgaataagtgttcatgattctatgatgtgcttttcaaatgaatcaaacacgtcaatttat 1220  T
Q  136 agaa 139  Q
    ||||    
T  1219 agaa 1216  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 59 - 138
Target Start/End: Original strand, 24735465 - 24735544
Alignment:
Q  59 ttagtgttcatatctactggataattgttcatgattttgtgatgtggtttgcaaatgaaccaaacacacaaatttataga 138  Q
    ||||||||||||||||||| | || |||||||  || |||| |||||||||||||||||| |||||   |||||||||||    
T  24735465 ttagtgttcatatctactgaacaagtgttcattgttatgtggtgtggtttgcaaatgaactaaacatgtaaatttataga 24735544  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 37 - 125
Target Start/End: Original strand, 2287609 - 2287697
Alignment:
Q  37 attgtagtacactgcatctagtttagtgttcatatctactggataattgttcatgattttgtgatgtggtttgcaaatgaaccaaacac 125  Q
    |||||||||||||||  ||||  | ||||| | ||||||| ||||| |||||||| || |  | |||| ||||||||||||||||||||    
T  2287609 attgtagtacactgctactagcgtggtgtttacatctactagataagtgttcatgtttcttcgttgtgttttgcaaatgaaccaaacac 2287697  T

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Target: scaffold0362 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0362
Description:

Target: scaffold0362; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 105 - 151
Target Start/End: Original strand, 10659 - 10705
Alignment:
Q  105 gtttgcaaatgaaccaaacacacaaatttatagaaggttttgtgcat 151  Q
    |||||||||||||| |||||| ||||||||||||||| |||||||||    
T  10659 gtttgcaaatgaacgaaacacgcaaatttatagaaggctttgtgcat 10705  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 70 - 149
Target Start/End: Original strand, 9437432 - 9437512
Alignment:
Q  70 atctactggataattgttcatgattttgtgatgtggtttgcaaatgaaccaa-acacacaaatttatagaaggttttgtgc 149  Q
    ||||||| ||||||||||||   ||||||| |||||||| |||||||||||| |||  | |||||||| ||| ||||||||    
T  9437432 atctactagataattgttcaccgttttgtggtgtggttttcaaatgaaccaacacaagccaatttatacaagtttttgtgc 9437512  T

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