View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1460_low_82 (Length: 230)
Name: NF1460_low_82
Description: NF1460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1460_low_82 |
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Alignment Details
Target: chr1 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 20 - 213
Target Start/End: Original strand, 31515017 - 31515210
Alignment:
| Q |
20 |
ttaacccaccggttctcaggagaaagagaccaagaaatgtggctgcgaggtaattaaagttcgaccaagaattcttccacccttgaaatcaaagtcatga |
119 |
Q |
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| T |
31515017 |
ttaatccacctgttctcaggagaaagagaccaagaaatgtggctgcgaagtaattaaagttcgaccaagaattcttccacccttgaaatcaaagtcatga |
31515116 |
T |
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| Q |
120 |
tctccaaacaatttatctattggggagttcattaaccatttaagctcaattgcttgatacaaataaaaaccattctagtaacctatcgaatatt |
213 |
Q |
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|||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||| |
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| T |
31515117 |
tctccaaacaatttatctattgtgtagttcattaaccatttaagctcaattgctcgatacaaataaaaaccattctaaaaacttatcgaatatt |
31515210 |
T |
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