View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1460_low_83 (Length: 228)
Name: NF1460_low_83
Description: NF1460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1460_low_83 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 7 - 228
Target Start/End: Original strand, 49684362 - 49684583
Alignment:
| Q |
7 |
ttttctttattgatttatcttgttgtgtggatgcaagttcctgactgataattctttgagtcgaattgaccaattcaaaactggatactgaacttcaaaa |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
49684362 |
ttttctttattgatttatcttgttgtgtggatgcaagttcctgactgataattctttgagtcgaattgaccaattcaaaactggatactgaacttcgaaa |
49684461 |
T |
|
| Q |
107 |
tttatatattagcatattccttaactatgttttctccaattgcataattaaagttgttaatattcatatttagccacagcagaattacaactatgtacta |
206 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49684462 |
tttacatattagcatattccttaactatgttttctctaattgcataattaaagttgttaatattcatatttagccacagcagaattacaactatgtacta |
49684561 |
T |
|
| Q |
207 |
cattatcaaattttatttcagt |
228 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
49684562 |
cattatcaaattttatttcagt |
49684583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 7 - 152
Target Start/End: Original strand, 20059441 - 20059584
Alignment:
| Q |
7 |
ttttctttattgatttatcttgttgtgt--ggatgcaagttcctgactgataattctttgagtcgaattgaccaattcaaaactggatactgaacttcaa |
104 |
Q |
| |
|
||||||||||||||||| ||| || ||| ||||||| ||| |||||| |||||||||||| || |||| |||||| ||||||||||||||||||| |
|
|
| T |
20059441 |
ttttctttattgatttaactttttttgtatggatgcaggtttctgactaataattctttga-----atggaccgattcaagactggatactgaacttcaa |
20059535 |
T |
|
| Q |
105 |
aatttatatattagcata-ttccttaactatgttttctccaattgcata |
152 |
Q |
| |
|
|||| | || |||||||| ||| | || ||| |||||||||||||||| |
|
|
| T |
20059536 |
aattaacatgttagcatatttcacttaccatgctttctccaattgcata |
20059584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University