View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1460_low_85 (Length: 220)

Name: NF1460_low_85
Description: NF1460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1460_low_85
NF1460_low_85
[»] chr8 (3 HSPs)
chr8 (56-201)||(10566271-10566416)
chr8 (76-124)||(10567046-10567094)
chr8 (1-36)||(10566436-10566472)
[»] chr4 (3 HSPs)
chr4 (55-124)||(45520793-45520862)
chr4 (81-134)||(45521716-45521769)
chr4 (1-36)||(45520881-45520917)
[»] chr3 (3 HSPs)
chr3 (67-125)||(52727637-52727696)
chr3 (68-130)||(52728540-52728602)
chr3 (84-125)||(2431661-2431702)
[»] chr5 (1 HSPs)
chr5 (84-125)||(2734095-2734136)
[»] chr1 (1 HSPs)
chr1 (84-128)||(50551444-50551488)


Alignment Details
Target: chr8 (Bit Score: 82; Significance: 7e-39; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 56 - 201
Target Start/End: Complemental strand, 10566416 - 10566271
Alignment:
Q  56 tatggacaggttatagcaggtaaactaatgaggtccaccaatggtcctttaaaattaaggtccatattagaggcttcctaaatataaatttatttgtaaa 155  Q
    |||||||| ||||||||||||||| ||||||| |||||||||  ||| ||||||||||||| ||||||||||| | ||||||||||||| | ||||||||    
T  10566416 tatggacaagttatagcaggtaaattaatgagatccaccaataatcccttaaaattaaggttcatattagagggtccctaaatataaatctctttgtaaa 10566317  T
Q  156 cgttccttaaactctaaatatatcttaccttgagcgagacaccatc 201  Q
      || |||||||||||||||||||||| ||||||| ||||||||||    
T  10566316 tatttcttaaactctaaatatatcttatcttgagccagacaccatc 10566271  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 124
Target Start/End: Original strand, 10567046 - 10567094
Alignment:
Q  76 taaactaatgaggtccaccaatggtcctttaaaattaaggtccatatta 124  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  10567046 taaactaatgaggtccaccaatgatcccttaaaattaaggtccatatta 10567094  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 10566472 - 10566436
Alignment:
Q  1 gaagagggaagagacc-acaatggttcaatggttcac 36  Q
    |||||||||||||||| ||||||||||||||||||||    
T  10566472 gaagagggaagagacccacaatggttcaatggttcac 10566436  T

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Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 55 - 124
Target Start/End: Complemental strand, 45520862 - 45520793
Alignment:
Q  55 ctatggacaggttatagcaggtaaactaatgaggtccaccaatggtcctttaaaattaaggtccatatta 124  Q
    |||| |||| ||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||    
T  45520862 ctatcgacatgttatagcaggtaaactaatgaggttcatcaatggtcccttaaaattaaggtccatatta 45520793  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 134
Target Start/End: Original strand, 45521716 - 45521769
Alignment:
Q  81 taatgaggtccaccaatggtcctttaaaattaaggtccatattagaggcttcct 134  Q
    |||||||||||||||||||||| ||||||||||||| |||||||| | ||||||    
T  45521716 taatgaggtccaccaatggtcccttaaaattaaggttcatattagggacttcct 45521769  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 45520917 - 45520881
Alignment:
Q  1 gaagagggaagagacc-acaatggttcaatggttcac 36  Q
    |||||||||||||||| ||||||||||||||||||||    
T  45520917 gaagagggaagagacccacaatggttcaatggttcac 45520881  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 67 - 125
Target Start/End: Complemental strand, 52727696 - 52727637
Alignment:
Q  67 tatagcaggtaaactaatgaggtccaccaatggt-cctttaaaattaaggtccatattag 125  Q
    ||||| |||||||||||||||||||||||||||| ||  |||||||||||||||||||||    
T  52727696 tatagtaggtaaactaatgaggtccaccaatggtacccataaaattaaggtccatattag 52727637  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 68 - 130
Target Start/End: Original strand, 52728540 - 52728602
Alignment:
Q  68 atagcaggtaaactaatgaggtccaccaatggtcctttaaaattaaggtccatattagaggct 130  Q
    ||||||||| |||||||||||||||  |||| ||||||||||||||| |||||||||| ||||    
T  52728540 atagcaggttaactaatgaggtccataaatgatcctttaaaattaagatccatattaggggct 52728602  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 84 - 125
Target Start/End: Complemental strand, 2431702 - 2431661
Alignment:
Q  84 tgaggtccaccaatggtcctttaaaattaaggtccatattag 125  Q
    |||||| ||||||||||||||| ||||| |||||||||||||    
T  2431702 tgaggtgcaccaatggtccttttaaattgaggtccatattag 2431661  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 84 - 125
Target Start/End: Complemental strand, 2734136 - 2734095
Alignment:
Q  84 tgaggtccaccaatggtcctttaaaattaaggtccatattag 125  Q
    |||||| ||||||||||||||| ||||| |||||||||||||    
T  2734136 tgaggtgcaccaatggtccttttaaattgaggtccatattag 2734095  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 128
Target Start/End: Original strand, 50551444 - 50551488
Alignment:
Q  84 tgaggtccaccaatggtcctttaaaattaaggtccatattagagg 128  Q
    ||||||||||| ||| |||||| ||||||||| ||||||||||||    
T  50551444 tgaggtccaccgatgatccttttaaattaaggaccatattagagg 50551488  T

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