View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1460_low_86 (Length: 217)
Name: NF1460_low_86
Description: NF1460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1460_low_86 |
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Alignment Details
Target: chr5 (Bit Score: 139; Significance: 7e-73; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 11 - 157
Target Start/End: Original strand, 38447601 - 38447747
Alignment:
| Q |
11 |
aagaatataactttgatgtctcaaataagcagttttcaaagttggttgatgattcaaatatgttctacaataatgtgggaagtacttctacaagcaatca |
110 |
Q |
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| T |
38447601 |
aagaaaataactttgatgtctcaaataagcagttttcaaagttggttgatgattcaaatatgttctacaataatgtgggaagtacttctacaagcaatca |
38447700 |
T |
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| Q |
111 |
tactacctcaagattgattgataggtgagtagattatgcattgctat |
157 |
Q |
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| T |
38447701 |
tactacctcgagattgattgataggtgagtagattatgcattgctat |
38447747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 65 - 98
Target Start/End: Original strand, 38181145 - 38181178
Alignment:
| Q |
65 |
caaatatgttctacaataatgtgggaagtacttc |
98 |
Q |
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| T |
38181145 |
caaacatgttctacaataatgtgggaagtacttc |
38181178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 65 - 98
Target Start/End: Complemental strand, 38189986 - 38189953
Alignment:
| Q |
65 |
caaatatgttctacaataatgtgggaagtacttc |
98 |
Q |
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| T |
38189986 |
caaacatgttctacaataatgtgggaagtacttc |
38189953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 65 - 98
Target Start/End: Original strand, 38208369 - 38208402
Alignment:
| Q |
65 |
caaatatgttctacaataatgtgggaagtacttc |
98 |
Q |
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| T |
38208369 |
caaacatgttctacaataatgtgggaagtacttc |
38208402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 65 - 98
Target Start/End: Complemental strand, 38217211 - 38217178
Alignment:
| Q |
65 |
caaatatgttctacaataatgtgggaagtacttc |
98 |
Q |
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| T |
38217211 |
caaacatgttctacaataatgtgggaagtacttc |
38217178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 65 - 98
Target Start/End: Original strand, 38456505 - 38456538
Alignment:
| Q |
65 |
caaatatgttctacaataatgtgggaagtacttc |
98 |
Q |
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| T |
38456505 |
caaacatgttctacaataatgtgggaagtacttc |
38456538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 200
Target Start/End: Original strand, 38447750 - 38447778
Alignment:
| Q |
172 |
atctattagtgttgccaatattaataata |
200 |
Q |
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| T |
38447750 |
atctattagtgttgccaatattaataata |
38447778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 56 - 169
Target Start/End: Original strand, 38342950 - 38343063
Alignment:
| Q |
56 |
ttgatgattcaaatatgttctacaataatgtgggaagtacttctacaagcaatcatactacctcaagattgattgataggtgagtagattatgcattgct |
155 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| || | |||||||||||||||||| ||||||||| ||| |
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| T |
38342950 |
ttgatgattcaaatatgttcttcaataatgtgggaagtacttctacatgcaatcatactacttctacattgattgataggtgagttgattatgcaatgcc |
38343049 |
T |
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| Q |
156 |
attctcttttatat |
169 |
Q |
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| T |
38343050 |
attctcttttatat |
38343063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 56 - 169
Target Start/End: Original strand, 38447143 - 38447256
Alignment:
| Q |
56 |
ttgatgattcaaatatgttctacaataatgtgggaagtacttctacaagcaatcatactacctcaagattgattgataggtgagtagattatgcattgct |
155 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| || | |||||||||||||||||| ||||||||| ||| |
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| T |
38447143 |
ttgatgattcaaatatgttcttcaataatgtgggaagtacttctacatgcaatcatactacttctacattgattgataggtgagttgattatgcaatgcc |
38447242 |
T |
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| Q |
156 |
attctcttttatat |
169 |
Q |
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|||||||||||||| |
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| T |
38447243 |
attctcttttatat |
38447256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 65 - 135
Target Start/End: Complemental strand, 6067776 - 6067706
Alignment:
| Q |
65 |
caaatatgttctacaataatgtgggaagtacttctacaagcaatcatactacctcaagattgattgatagg |
135 |
Q |
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| T |
6067776 |
caaacatgttctacaataacgtgggaagtacttctacaagcaatcatactacttcaacattgattgatagg |
6067706 |
T |
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