View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1460_low_88 (Length: 216)
Name: NF1460_low_88
Description: NF1460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1460_low_88 |
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Alignment Details
Target: chr6 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 15 - 199
Target Start/End: Original strand, 29296873 - 29297056
Alignment:
| Q |
15 |
agtagtgactaaggatgactctgaattttggttcatgggatttttaaggtatgagaaagctatcaagaatctcaataatgccatttccatggccaataaa |
114 |
Q |
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| T |
29296873 |
agtagtgactaaggatgactctgaattttggttcatgggatttttaaggtatgagaaagctatcaagaatctcaataatgccatttccatggccaataaa |
29296972 |
T |
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| Q |
115 |
ttctgaaaggaaaacttgaacatagnnnnnnnnncctttcttttgagagacaaaaacttgaacatagttaagtctcatcttgtag |
199 |
Q |
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| T |
29296973 |
ttctgaaaggaaaacttgaacatagttttttttt-tttttttttgagagacaaaaacttgaatatagttaagtctcatcttgtag |
29297056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 56 - 118
Target Start/End: Original strand, 29308088 - 29308154
Alignment:
| Q |
56 |
ttttaaggtatgagaaagctatcaagaatctcaataa----tgccatttccatggccaataaattct |
118 |
Q |
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| T |
29308088 |
ttttaaggtataagaaagctatcaagaatctcaataaagccagccatttccatggccaataaattct |
29308154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 75
Target Start/End: Complemental strand, 42394969 - 42394922
Alignment:
| Q |
28 |
gatgactctgaattttggttcatgggatttttaaggtatgagaaagct |
75 |
Q |
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| T |
42394969 |
gatgattctgaattttggtttatgggatttttacgatatgagaaagct |
42394922 |
T |
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