View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1460_low_93 (Length: 210)
Name: NF1460_low_93
Description: NF1460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1460_low_93 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 41701609 - 41701818
Alignment:
| Q |
1 |
atatgcaaaattatctttcgctataaaaatagtttatacataagcataagcacttaattaactaagttgtttatccaaacagggcttaccaatcaataag |
100 |
Q |
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| T |
41701609 |
atatacaaaattatctttcgctataaaaatagtttatacataagcataagcacttaattaactaagttgtttatccaaacagggcttaccaatcaataag |
41701708 |
T |
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| Q |
101 |
tgagaatctaaaaagtgctagtgctaaaacacaagttgaatgagagaaatatgacttacaagaacatcagcacgtgaaaataaatcaacaccaacttcaa |
200 |
Q |
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| T |
41701709 |
tgagaatctaaaaagtgctagtgctgaaacacaagttgaatgagtgaaatatgacttacaagaacatcagcacatgaagataaatcaacaccaacttcaa |
41701808 |
T |
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| Q |
201 |
gttcatcaga |
210 |
Q |
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|||||||||| |
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| T |
41701809 |
gttcatcaga |
41701818 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 48
Target Start/End: Complemental strand, 13866860 - 13866823
Alignment:
| Q |
11 |
ttatctttcgctataaaaatagtttatacataagcata |
48 |
Q |
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|||||||| |||||| |||||||||||||||||||||| |
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| T |
13866860 |
ttatcttttgctatagaaatagtttatacataagcata |
13866823 |
T |
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