View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1460_low_95 (Length: 202)
Name: NF1460_low_95
Description: NF1460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1460_low_95 |
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Alignment Details
Target: chr6 (Bit Score: 132; Significance: 9e-69; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 18366669 - 18366800
Alignment:
| Q |
1 |
ataggatcaaattcagcctgatacagaaattgcaccatcacagggtgtcaaaacaacgacatttttcataagcaggcacaaaaaacatatcaagctattc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18366669 |
ataggatcaaattcagcctgatacagaaattgcaccatcacagggtgtcaaaacaacgacatttttcataagcaggcacaaaaaacatatcaagctattc |
18366768 |
T |
|
| Q |
101 |
agtgagagagaaaagcaggtccacagttctca |
132 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
18366769 |
agtgagagagaaaagcaggtccacagttctca |
18366800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 18371933 - 18372064
Alignment:
| Q |
1 |
ataggatcaaattcagcctgatacagaaattgcaccatcacagggtgtcaaaacaacgacatttttcataagcaggcacaaaaaacatatcaagctattc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18371933 |
ataggatcaaattcagcctgatacagaaattgcaccatcacagggtgtcaaaacaacgacatttttcataagcaggcacaaaaaacatatcaagctattc |
18372032 |
T |
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| Q |
101 |
agtgagagagaaaagcaggtccacagttctca |
132 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
18372033 |
agtgagagagaaaagcaggtccacagttctca |
18372064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 18376223 - 18376354
Alignment:
| Q |
1 |
ataggatcaaattcagcctgatacagaaattgcaccatcacagggtgtcaaaacaacgacatttttcataagcaggcacaaaaaacatatcaagctattc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18376223 |
ataggatcaaattcagcctgatacagaaattgcaccatcacagggtgtcaaaacaacgacatttttcataagcaggcacaaaaaacatatcaagctattc |
18376322 |
T |
|
| Q |
101 |
agtgagagagaaaagcaggtccacagttctca |
132 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
18376323 |
agtgagagagaaaagcaggtccacagttctca |
18376354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 135 - 202
Target Start/End: Original strand, 18367221 - 18367289
Alignment:
| Q |
135 |
agcactcacctccgtttccattt-tgaaagacacttggcgtgccatgactatagcagctgcttcttggt |
202 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18367221 |
agcactcacctccgtttccatttgtgaaagacacttggcgtgccatgactatagcagctgcttcttggt |
18367289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 135 - 202
Target Start/End: Original strand, 18372485 - 18372553
Alignment:
| Q |
135 |
agcactcacctccgtttccattt-tgaaagacacttggcgtgccatgactatagcagctgcttcttggt |
202 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18372485 |
agcactcacctccgtttccatttgtgaaagacacttggcgtgccatgactatagcagctgcttcttggt |
18372553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 124; Significance: 5e-64; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 124; E-Value: 5e-64
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 2975914 - 2975783
Alignment:
| Q |
1 |
ataggatcaaattcagcctgatacagaaattgcaccatcacagggtgtcaaaacaacgacatttttcataagcaggcacaaaaaacatatcaagctattc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |
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| T |
2975914 |
ataggatcaaattcagcctgatacagaaattgcaccatcacagggtgtcaaaacaatgacatttttcataagcaggcacaaaaaacatatcaagctaatc |
2975815 |
T |
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| Q |
101 |
agtgagagagaaaagcaggtccacagttctca |
132 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
2975814 |
agtgagagagaaaagcaggtccacagttctca |
2975783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 135 - 202
Target Start/End: Complemental strand, 2975319 - 2975252
Alignment:
| Q |
135 |
agcactcacctccgtttccattttgaaagacacttggcgtgccatgactatagcagctgcttcttggt |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2975319 |
agcactcacctccgtttccattttgaaagacacttggcgtgccatgactatagcagctgcttcttggt |
2975252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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