View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14610_high_1_N (Length: 368)
Name: NF14610_high_1_N
Description: NF14610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14610_high_1_N |
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Alignment Details
Target: chr6 (Bit Score: 166; Significance: 9e-89; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 8 - 353
Target Start/End: Original strand, 17075410 - 17075755
Alignment:
| Q |
8 |
cgctggtgttatttcttcgacaagaaagaaggttaagaaagtggtgcggccttttgctaaatccagttcaatagttataaagaggaagaaagtgaatgga |
107 |
Q |
| |
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||||||||||||||||||| |||| |||||||||||||||||||||||||| |||| |||||||| | || |||| ||| ||||||||||||| ||| |
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| T |
17075410 |
cgctggtgttatttcttcggcaaggaagaaggttaagaaagtggtgcggcccattgcacaatccagtaccatcgttaacaagcggaagaaagtgaacgga |
17075509 |
T |
|
| Q |
108 |
attttgcggcattcggtatttagtttgaagaaggtggcgcggttgcccagcaaagaccgggccgccgttttgcacattttaaaatctaaatcgagaaaat |
207 |
Q |
| |
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|||||||| || ||||| ||||| |||| |||||||||||| |||| |||||||| || || | ||||| ||||| ||||||||||||| |||||||| |
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| T |
17075510 |
attttgcgacactcggtgattagtctgaaaaaggtggcgcggctgcctagcaaagatcgttcctcagttttacacatcttaaaatctaaattgagaaaat |
17075609 |
T |
|
| Q |
208 |
tacaaggttcggatcgtcttaaaaaggcggttagggcggtttcttcgagagtttcagatgggagttcctcgtcggggtcggttaacaatgattgggttaa |
307 |
Q |
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|
||||||| ||||| || |||||||||||||| | | |||||||||| ||| ||| ||||| ||||| || |||||||| |||||||||||||||||||| |
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| T |
17075610 |
tacaaggctcggaacgccttaaaaaggcggtaaaagtggtttcttcgggagcttcggatggtagttcgtcatcggggtccgttaacaatgattgggttaa |
17075709 |
T |
|
| Q |
308 |
ttgggtggcagtgcatgggaatgagaaggttgtgattgatgatgtc |
353 |
Q |
| |
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|||||||||||||||||| ||||||||||||||| ||||||||||| |
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|
| T |
17075710 |
ttgggtggcagtgcatggaaatgagaaggttgtgtttgatgatgtc |
17075755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 8 - 226
Target Start/End: Original strand, 11053484 - 11053702
Alignment:
| Q |
8 |
cgctggtgttatttcttcgacaagaaagaaggttaagaaagtggtgcggccttttgctaaatccagt-tcaatagttataaagaggaagaaagtgaatgg |
106 |
Q |
| |
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||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| ||||| || || | | | || |||||||||||||||| |
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| T |
11053484 |
cgctggtgttatttcatcggcaagaaagaaggttaagaaagtggtgcggcctattgcccaatccggtatctgt-gcaaacaatcggaagaaagtgaatgg |
11053582 |
T |
|
| Q |
107 |
aattttgcggcattcggtatttagtttgaagaaggtggcgcggttgcccagcaaagaccgggccgccgttttgcacattttaaaatctaaatcgagaaaa |
206 |
Q |
| |
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|| ||||||| ||||| |||||||||| ||||||||||||||||| |||||||| ||| || || |||| || || ||||||||||||||||| ||| |
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| T |
11053583 |
ggttctgcggcactcggtgattagtttgaaaaaggtggcgcggttgcctagcaaagatcggtccaccattttacatatcttaaaatctaaatcgaggaaa |
11053682 |
T |
|
| Q |
207 |
ttacaaggttcggatcgtct |
226 |
Q |
| |
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||||||||||| || ||||| |
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| T |
11053683 |
ttacaaggttcagaccgtct |
11053702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 222 - 352
Target Start/End: Original strand, 11064036 - 11064166
Alignment:
| Q |
222 |
cgtcttaaaaaggcggttagggcggtttcttcgagagtttcagatgggagttcctcgtcggggtcggttaacaatgattgggttaattgggtggcagtgc |
321 |
Q |
| |
|
||||||||||||| ||||| || |||||| ||| |||||| || || |||||||||||||| |||||||| ||||||||||| |||||||||||||||| |
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| T |
11064036 |
cgtcttaaaaaggtggttaaggtggtttcctcggaagtttcggaaggtagttcctcgtcgggatcggttaataatgattgggtcaattgggtggcagtgc |
11064135 |
T |
|
| Q |
322 |
atgggaatgagaaggttgtgattgatgatgt |
352 |
Q |
| |
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||| ||||||||| || ||| |||||||||| |
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| T |
11064136 |
atgagaatgagaaagtagtggttgatgatgt |
11064166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 134; Significance: 1e-69; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 91 - 352
Target Start/End: Complemental strand, 17684166 - 17683905
Alignment:
| Q |
91 |
ggaagaaagtgaatggaattttgcggcattcggtatttagtttgaagaaggtggcgcggttgcccagcaaagaccgggccgccgttttgcacattttaaa |
190 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||| |||||||||| |||||||||| |||||| |||||||| ||| || ||||||| || || ||||| |
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| T |
17684166 |
ggaagaaagtgaatggggttttgcggcactcggtgattagtttgaaaaaggtggcgcagttgcctagcaaagatcggtccaccgttttacatatcttaaa |
17684067 |
T |
|
| Q |
191 |
atctaaatcgagaaaattacaaggttcggatcgtcttaaaaaggcggttagggcggtttcttcgagagtttcagatgggagttcctcgtcggggtcggtt |
290 |
Q |
| |
|
|||||||||||| |||||||||||||| || ||||||||||||| ||| | || |||||| ||| ||||||| || || |||||||||||| |||||||| |
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| T |
17684066 |
atctaaatcgaggaaattacaaggttcagaccgtcttaaaaaggtggtaaaggtggtttcctcgggagtttcggaaggtagttcctcgtcgaggtcggtt |
17683967 |
T |
|
| Q |
291 |
aacaatgattgggttaattgggtggcagtgcatgggaatgagaaggttgtgattgatgatgt |
352 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||| || | | |||||||||| |
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| T |
17683966 |
aataatgattgggttaattgggtggcagtgcatgggaatgagaaagtagcggttgatgatgt |
17683905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 174 - 337
Target Start/End: Complemental strand, 36160065 - 36159902
Alignment:
| Q |
174 |
gttttgcacattttaaaatctaaatcgagaaaattacaaggttcggatcgtcttaaaaaggcggttagggcggtttcttcgagagtttcagatgggagtt |
273 |
Q |
| |
|
|||||||||||| ||||||||||| | ||||||||||| || ||||||||||| ||||||||||| | || || |||||| ||| ||||||| |||| |
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| T |
36160065 |
gttttgcacattctaaaatctaaagctagaaaattacatgggtcggatcgtctgaaaaaggcggtgaaggtggggtcttcgggagcttcagataaaagtt |
36159966 |
T |
|
| Q |
274 |
cctcgtcggggtcggttaacaatgattgggttaattgggtggcagtgcatgggaatgagaaggt |
337 |
Q |
| |
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| || || | || |||||||| ||||||||||||| |||| |||||||||||||||||||| |
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| T |
36159965 |
cttcttcatgttcagttaacaacgattgggttaattttgtggttgtgcatgggaatgagaaggt |
36159902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 17684249 - 17684198
Alignment:
| Q |
8 |
cgctggtgttatttcttcgacaagaaagaaggttaagaaagtggtgcggcct |
59 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||| | |||||||||||||||| |
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| T |
17684249 |
cgctggtgttatttcatcggcaagaaagaaggtcaggaaagtggtgcggcct |
17684198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 128; Significance: 4e-66; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 87 - 350
Target Start/End: Original strand, 10559739 - 10560002
Alignment:
| Q |
87 |
aagaggaagaaagtgaatggaattttgcggcattcggtatttagtttgaagaaggtggcgcggttgcccagcaaagaccgggccgccgttttgcacattt |
186 |
Q |
| |
|
|||||||||||||||||||| || ||||||| ||||| |||||||||| ||||||| || | |||| |||||||| | || ||||||| ||||| | |
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|
| T |
10559739 |
aagaggaagaaagtgaatgggtttctgcggcactcggtgattagtttgaaaaaggtggggcagctgcctagcaaagatcaatccaccgttttacacatct |
10559838 |
T |
|
| Q |
187 |
taaaatctaaatcgagaaaattacaaggttcggatcgtcttaaaaaggcggttagggcggtttcttcgagagtttcagatgggagttcctcgtcggggtc |
286 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||| ||||||||||| | || |||||||||| ||| ||||||||| ||||| || ||||| || |
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| T |
10559839 |
taaaatctaaatcgagaaaattacaaggatcagatcgtctcaaaaaggcggtaaaggtggtttcttcgggagcttcagatggtagttcttcctcgggttc |
10559938 |
T |
|
| Q |
287 |
ggttaacaatgattgggttaattgggtggcagtgcatgggaatgagaaggttgtgattgatgat |
350 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
10559939 |
agataacaatgattgggttaattgggtggcagtgcatgggaatgagaaggttgtagttgatgat |
10560002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 10558434 - 10558490
Alignment:
| Q |
8 |
cgctggtgttatttcttcgacaagaaagaaggttaagaaagtggtgcggccttttgc |
64 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
10558434 |
cgctggtgttatttcttcggcaagaaagaaggttaagaaagtggtgcggcctattgc |
10558490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 120; Significance: 3e-61; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 9 - 352
Target Start/End: Complemental strand, 26741878 - 26741535
Alignment:
| Q |
9 |
gctggtgttatttcttcgacaagaaagaaggttaagaaagtggtgcggccttttgctaaatccagttcaatagttataaagaggaagaaagtgaatggaa |
108 |
Q |
| |
|
|||||||||||||| ||| | || ||||||||||||| ||||| || |||| ||||| |||| || | | |||| ||| ||||||||||||||| | |
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|
| T |
26741878 |
gctggtgttatttcatcggctaggaagaaggttaagagagtggcgcagcctattgctcaatcatgtacctttgttaacaagcggaagaaagtgaatgaga |
26741779 |
T |
|
| Q |
109 |
ttttgcggcattcggtatttagtttgaagaaggtggcgcggttgcccagcaaagaccgggccgccgttttgcacattttaaaatctaaatcgagaaaatt |
208 |
Q |
| |
|
| || ||| | |||| |||||||||| ||||||| ||| ||||| ||||||| || || | ||||| ||||| ||||||||||| ||||||||||| |
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|
| T |
26741778 |
tcttacggaacccggtgattagtttgaaaaaggtggatcggctgccctgcaaagatcgttccacagttttacacatcttaaaatctaagtcgagaaaatt |
26741679 |
T |
|
| Q |
209 |
acaaggttcggatcgtcttaaaaaggcggttagggcggtttcttcgagagtttcagatgggagttcctcgtcggggtcggttaacaatgattgggttaat |
308 |
Q |
| |
|
|||||| |||||||||||||| ||||| || |||| |||||||||| ||| ||| ||||| ||||| || ||||| || |||||||| |||||||||||| |
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|
| T |
26741678 |
acaaggatcggatcgtcttaagaaggctgtaagggtggtttcttcgggagcttcggatggtagttcttcctcgggttcagttaacaacgattgggttaat |
26741579 |
T |
|
| Q |
309 |
tgggtggcagtgcatgggaatgagaaggttgtgattgatgatgt |
352 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
26741578 |
tgggtggaagtgcatgggaatgagaaggttgtggttgatgatgt |
26741535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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