View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14610_low_1 (Length: 322)
Name: NF14610_low_1
Description: NF14610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14610_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 44344099 - 44343776
Alignment:
| Q |
1 |
aactcaggaactaattgctaattaattaacctttgatcagtgaaaagaagatgtctggtgtatctgtagca------------------ccacaaactcc |
82 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
44344099 |
aactaaggaactaattgctaattaattaacctttgatcagtgaaaagaagatgtctggtgtatctgtagcaacagctcctccaacagcaccacaaactcc |
44344000 |
T |
|
| Q |
83 |
aggcataaaagcaaaccagcgatcagaagcaccttctgcaggtggaatgatgggttcattacgtgtaatagagcttcaacttgtagcattcatattagtt |
182 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44343999 |
aggcacaaaagcaaaccagcgatcagaagcaccttctgcaggtggaatgatgggttcattacgtgtaatagagcttcaacttgtagcattcatattagtt |
44343900 |
T |
|
| Q |
183 |
ttctcagcaagtggtcttgttcctcttcttgatctagtttttccagctcttgcctctgcatacatcttagcacttgcacgttacgcatttccatcatctc |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44343899 |
ttctcagcaagtggtcttgttcctcttcttgatctagtttttccagctcttgcctctgcatacatcttagcacttgcacgttacgcatttccatcatctc |
44343800 |
T |
|
| Q |
283 |
cttctactacatcaaattcacaac |
306 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
44343799 |
cttctactacatcaaattcacaac |
44343776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 128 - 218
Target Start/End: Complemental strand, 39475241 - 39475151
Alignment:
| Q |
128 |
aatgatgggttcattacgtgtaatagagcttcaacttgtagcattcatattagttttctcagcaagtggtcttgttcctcttcttgatcta |
218 |
Q |
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||||||||||||||||||||||||||| || ||||||||||| || |||| ||||||||||||||||||||||| ||||||||||||||| |
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| T |
39475241 |
aatgatgggttcattacgtgtaatagaactacaacttgtagcctttgtattggttttctcagcaagtggtcttgtccctcttcttgatcta |
39475151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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