View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14611_high_1 (Length: 505)
Name: NF14611_high_1
Description: NF14611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14611_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 55 - 502
Target Start/End: Complemental strand, 4906357 - 4905903
Alignment:
| Q |
55 |
cacaaaaatataaattcttgtgttgttattatgtttttactttaacacatgttatgtcataggtattaaacttgtaatgtatagggtatggtttgtttta |
154 |
Q |
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| T |
4906357 |
cacaaaaatataaattcttgtgttgttattatgtttttactttaacacatgttatgtcataggtattaaacttgtaatgtatagggtatggtttgtttta |
4906258 |
T |
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| Q |
155 |
ttgagaagcattgaatataaagtgatgatggtatggtcgtttaccaacaacaaaaaagtaaaggtgtggtca-----cggacgtagcgtggagaacatga |
249 |
Q |
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| T |
4906257 |
ttgagaagcattgaatataaagtgatg---gtatggtcgtttaccaacaacaaaaaagtaaaggtgtggtcaggtcacggacgtagcgtggagaacatga |
4906161 |
T |
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| Q |
250 |
gggcagttagtgatggtaagaaaatgtctttaatatattaggcagggtattattgtggaccgttcatatttaatagacggaaagaacatgaagtattttt |
349 |
Q |
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| T |
4906160 |
gggcagttagtgatggtaagaaaaggtctttaatatattaggcagggtattattgtggaccgttcatatttaatagacggaaagaacatgaagtattttt |
4906061 |
T |
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| Q |
350 |
actcatcatatcattctcaatcattttactttaggacaaacaagcatagattattctattcaa-----aagataaaacaaagatggacagggttattatc |
444 |
Q |
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| T |
4906060 |
actcatcatatcattctcaatcattttactttaggacaaacaagcatagattattctattcaaaagaaaagataaaacaaagatggacagggttattatc |
4905961 |
T |
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| Q |
445 |
ccgaggctacttttcctcaaaacaaagtatcaaatccaaactgcataaaacgattcat |
502 |
Q |
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| T |
4905960 |
ccgaggctacttttcctcaaaacaaagtatcaaatccaaactgcataaaacgattcat |
4905903 |
T |
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