View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14611_low_2 (Length: 361)
Name: NF14611_low_2
Description: NF14611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14611_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 43704618 - 43704959
Alignment:
| Q |
1 |
atgagaaaaataatagtccatatattttcatatacgcccccaattgccacactgctctattgaaactgtaaggtagaagatacttgtgagatataatttg |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
43704618 |
atgagaaaaataatagtctatatattttcatatacgcccccaattgccacactgctctattgaaacggtaaggtagaagatacttgtgagatataatttg |
43704717 |
T |
|
| Q |
101 |
ggggcatattatacttttgtcatacaattatatactactgnnnnnnncaaatacgtgcaaagtgtgattgttaaagctcacttgtctcgtaaatatagct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43704718 |
ggggcatattatacttttgtcatacaattatatactactgtttttttcaaatacgtgcaaagtgtgattgttaaagctcacttgtctcgtaaatatagct |
43704817 |
T |
|
| Q |
201 |
tagaaggt-nnnnnnnnnggtctacatcgatatttaatatgttgtggtacatacaattatacacttctcggtacttatctttgtgtgagtttttcagtga |
299 |
Q |
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|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43704818 |
tagaaggtaaaaaaaaaaggtctacatcgatatttaatatgtcgtggtacatacaattatacacttctcggtacttatctttgtgtgagtttttcagtga |
43704917 |
T |
|
| Q |
300 |
gattctttaaagttaaaaacatattacagtgcacttaagcac |
341 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
43704918 |
gattctttaaagttaaaaacatattacagtgcacttaagcac |
43704959 |
T |
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