View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14611_low_3 (Length: 339)
Name: NF14611_low_3
Description: NF14611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14611_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 17 - 322
Target Start/End: Original strand, 383832 - 384137
Alignment:
| Q |
17 |
gatcaaatcagaagcaacttccctagattcagaaataacagcaagatcatcagaaacccacttccttgaagtaggaggagtcataatagtagcaaacctc |
116 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
383832 |
gatcaaatcagaagcaacttccctagactcagaaataacagcaagatcatcagaaacccacttccttgaagtaggaggagtcataatagtagcaaacctc |
383931 |
T |
|
| Q |
117 |
tgcaaatccctataatccttatgcatagctttagcagctttctttctagccatagcaaaaacaacatgatccatagcatcatcattcatataaacctcaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
383932 |
tgcaaatccctataatccttatgcatagctttagcagctttctttctagccatagcaaaaacaacatgatccatagcatcatcattcatataaacctcaa |
384031 |
T |
|
| Q |
217 |
aagtaatctcatcttttgaaggaaccaccatgttataaatcctagcaataagatcatgtctactcttcaactccatagtagccaacaacccttgacagta |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
384032 |
aagtaatctcatcttttgaaggaaccaccatgttataaatcctagcaataagatcatgtctactcttcaactccatagtagccaacaacccttgacagta |
384131 |
T |
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| Q |
317 |
tcttct |
322 |
Q |
| |
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|||||| |
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| T |
384132 |
tcttct |
384137 |
T |
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