View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14611_low_5 (Length: 262)

Name: NF14611_low_5
Description: NF14611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14611_low_5
NF14611_low_5
[»] chr1 (5 HSPs)
chr1 (18-238)||(6585212-6585432)
chr1 (175-238)||(30713486-30713549)
chr1 (185-238)||(40703928-40703981)
chr1 (163-238)||(28381434-28381509)
chr1 (166-238)||(5598060-5598132)
[»] chr3 (4 HSPs)
chr3 (131-238)||(23873615-23873722)
chr3 (165-221)||(8441012-8441068)
chr3 (166-238)||(6985375-6985447)
chr3 (186-238)||(8437807-8437859)
[»] chr4 (3 HSPs)
chr4 (165-238)||(50016148-50016221)
chr4 (165-238)||(54684080-54684153)
chr4 (168-238)||(17874366-17874436)
[»] chr6 (3 HSPs)
chr6 (165-238)||(15601794-15601867)
chr6 (178-238)||(28633864-28633924)
chr6 (165-237)||(33820904-33820976)
[»] chr5 (2 HSPs)
chr5 (163-238)||(35836680-35836755)
chr5 (165-231)||(33019022-33019088)
[»] chr7 (3 HSPs)
chr7 (165-238)||(6344237-6344310)
chr7 (165-238)||(2317377-2317450)
chr7 (175-238)||(42964734-42964797)
[»] chr2 (3 HSPs)
chr2 (165-238)||(36930655-36930728)
chr2 (166-238)||(13415154-13415226)
chr2 (166-238)||(6728374-6728446)
[»] chr8 (1 HSPs)
chr8 (166-238)||(39298070-39298142)
[»] scaffold0750 (1 HSPs)
scaffold0750 (163-238)||(5688-5763)


Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 6585432 - 6585212
Alignment:
Q  18 ctttgcttagtatcactgtacttctaaacagccttcaaccagtattgtctggttagtcgcaataagattgaaacattgttactataaatgtttttataca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6585432 ctttgcttagtatcactgtacttctaaacagccttcaaccagtattgtctggttagtcgcaataagattgaaacattgttactataaatgtttttataca 6585333  T
Q  118 tcggctagcaatgttgtggtttttctttgactgattgtttgtatatttagtagtctcttcggtacgtcttgtgctgagaagattgatttggcagtgttaa 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||| |||    
T  6585332 tcggctagcaatgttgtggtttttctttgactgattgtttgtatatttagtagtctcttcagtacgtcttgtgctgagaagattgctttgtcagtgctaa 6585233  T
Q  218 tataatccagttttgtttgtt 238  Q
    ||||||| |||||| ||||||    
T  6585232 tataatcaagttttatttgtt 6585212  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 175 - 238
Target Start/End: Original strand, 30713486 - 30713549
Alignment:
Q  175 ttcggtacgtcttgtgctgagaagattgatttggcagtgttaatataatccagttttgtttgtt 238  Q
    |||||||| |||||||||| |||||||| | ||| ||||||||||||||||| |||||||||||    
T  30713486 ttcggtacatcttgtgctgtgaagattgctatggtagtgttaatataatccatttttgtttgtt 30713549  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 185 - 238
Target Start/End: Complemental strand, 40703981 - 40703928
Alignment:
Q  185 cttgtgctgagaagattgatttggcagtgttaatataatccagttttgtttgtt 238  Q
    ||||| |||||||||||| ||| ||||||||||||||||||| |||||||||||    
T  40703981 cttgtactgagaagattgttttagcagtgttaatataatccatttttgtttgtt 40703928  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 238
Target Start/End: Complemental strand, 28381509 - 28381434
Alignment:
Q  163 tttagtagtctcttcggtacgtcttgtgctgagaagattgatttggcagtgttaatataatccagttttgtttgtt 238  Q
    ||||||||||| |||||||| ||||||||||||| |  || ||| ||| ||||||||||||||| |||| ||||||    
T  28381509 tttagtagtcttttcggtacatcttgtgctgagagggctgctttagcaatgttaatataatccatttttatttgtt 28381434  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 238
Target Start/End: Original strand, 5598060 - 5598132
Alignment:
Q  166 agtagtctcttcggtacgtcttgtgctgagaagattgatttggcagtgttaatataatccagttttgtttgtt 238  Q
    |||||||| |||||||| ||||||||||||  |  || ||| |||||||||||||| |||| |||||||||||    
T  5598060 agtagtcttttcggtacatcttgtgctgagggggctgctttagcagtgttaatatattccatttttgtttgtt 5598132  T

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Target: chr3 (Bit Score: 64; Significance: 5e-28; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 131 - 238
Target Start/End: Complemental strand, 23873722 - 23873615
Alignment:
Q  131 ttgtggtttttctttgactgattgtttgtatatttagtagtctcttcggtacgtcttgtgctgagaagattgatttggcagtgttaatataatccagttt 230  Q
    ||||||||| ||||||||||| |||||||| ||||||||||||||| ||||||||||| |||||| ||| |  |||| |||||||||||||||||| |||    
T  23873722 ttgtggtttctctttgactgactgtttgtaaatttagtagtctctttggtacgtcttgcgctgaggagacttttttgtcagtgttaatataatccatttt 23873623  T
Q  231 tgtttgtt 238  Q
    ||||||||    
T  23873622 tgtttgtt 23873615  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 165 - 221
Target Start/End: Original strand, 8441012 - 8441068
Alignment:
Q  165 tagtagtctcttcggtacgtcttgtgctgagaagattgatttggcagtgttaatata 221  Q
    ||||||||| |||||||| |||||||||| |||||||| | ||||||||||||||||    
T  8441012 tagtagtcttttcggtacatcttgtgctgtgaagattgctatggcagtgttaatata 8441068  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 238
Target Start/End: Complemental strand, 6985447 - 6985375
Alignment:
Q  166 agtagtctcttcggtacgtcttgtgctgagaagattgatttggcagtgttaatataatccagttttgtttgtt 238  Q
    |||||||| |||||||| ||||||| ||||  |  || ||| |||||||||||||| |||| |||||||||||    
T  6985447 agtagtcttttcggtacatcttgtgttgagtgggctgctttagcagtgttaatatattccatttttgtttgtt 6985375  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 8437807 - 8437859
Alignment:
Q  186 ttgtgctgagaagattgatttggcagtgttaatataatccagttttgtttgtt 238  Q
    |||||||| |||||||| | |||||||||||||||| |||| ||||| |||||    
T  8437807 ttgtgctgtgaagattgctatggcagtgttaatatattccatttttgcttgtt 8437859  T

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Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 165 - 238
Target Start/End: Original strand, 50016148 - 50016221
Alignment:
Q  165 tagtagtctcttcggtacgtcttgtgctgagaagattgatttggcagtgttaatataatccagttttgtttgtt 238  Q
    ||||||||| |||||||| |||||||||| |||||||| | ||||||||||||||||||||| ||||| |||||    
T  50016148 tagtagtcttttcggtacatcttgtgctgtgaagattgctatggcagtgttaatataatccatttttgcttgtt 50016221  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 165 - 238
Target Start/End: Complemental strand, 54684153 - 54684080
Alignment:
Q  165 tagtagtctcttcggtacgtcttgtgctgagaagattgatttggcagtgttaatataatccagttttgtttgtt 238  Q
    ||||||||| |||||||| |||||||||| |||||||| | ||||||||||||||||||||| ||||| |||||    
T  54684153 tagtagtcttttcggtacatcttgtgctgtgaagattgctatggcagtgttaatataatccatttttgcttgtt 54684080  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 238
Target Start/End: Complemental strand, 17874436 - 17874366
Alignment:
Q  168 tagtctcttcggtacgtcttgtgctgagaagattgatttggcagtgttaatataatccagttttgtttgtt 238  Q
    |||||| |||||||| || |||||||||| |  || ||| ||||||||||||||||| | |||||||||||    
T  17874436 tagtcttttcggtacatcatgtgctgagagggctgctttagcagtgttaatataatcaatttttgtttgtt 17874366  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 165 - 238
Target Start/End: Complemental strand, 15601867 - 15601794
Alignment:
Q  165 tagtagtctcttcggtacgtcttgtgctgagaagattgatttggcagtgttaatataatccagttttgtttgtt 238  Q
    ||||||||| |||||||| |||||||||| |||||||| | ||||||||||||||||||| | ||||| |||||    
T  15601867 tagtagtcttttcggtacatcttgtgctgtgaagattgctatggcagtgttaatataatctatttttgcttgtt 15601794  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 238
Target Start/End: Original strand, 28633864 - 28633924
Alignment:
Q  178 ggtacgtcttgtgctgagaagattgatttggcagtgttaatataatccagttttgtttgtt 238  Q
    ||||| ||||||||||||| ||||| | ||||||||||| ||||||||| ||||| |||||    
T  28633864 ggtacatcttgtgctgagaggattgctatggcagtgttattataatccatttttgcttgtt 28633924  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 237
Target Start/End: Complemental strand, 33820976 - 33820904
Alignment:
Q  165 tagtagtctcttcggtacgtcttgtgctgagaagattgatttggcagtgttaatataatccagttttgtttgt 237  Q
    ||||||||| ||||||||  ||||||||||||  | || | |||| ||||||||||||| || ||||||||||    
T  33820976 tagtagtcttttcggtacaccttgtgctgagagaactgctatggcggtgttaatataattcatttttgtttgt 33820904  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 163 - 238
Target Start/End: Complemental strand, 35836755 - 35836680
Alignment:
Q  163 tttagtagtctcttcggtacgtcttgtgctgagaagattgatttggcagtgttaatataatccagttttgtttgtt 238  Q
    ||||||||||| |||||||| ||||||||||||| || || | | |||||||||||||||| || |||||||||||    
T  35836755 tttagtagtcttttcggtacatcttgtgctgagaggactgctatagcagtgttaatataattcatttttgtttgtt 35836680  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 231
Target Start/End: Original strand, 33019022 - 33019088
Alignment:
Q  165 tagtagtctcttcggtacgtcttgtgctgagaagattgatttggcagtgttaatataatccagtttt 231  Q
    ||||||||| |||||||| |||| ||||| |||||||| | || || ||||||||||||||| ||||    
T  33019022 tagtagtcttttcggtacatcttatgctgtgaagattgttatgacaatgttaatataatccattttt 33019088  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 165 - 238
Target Start/End: Original strand, 6344237 - 6344310
Alignment:
Q  165 tagtagtctcttcggtacgtcttgtgctgagaagattgatttggcagtgttaatataatccagttttgtttgtt 238  Q
    ||||||||| |||||||| |||||||||| |||||||| | || ||||||||||||| |||| ||||| |||||    
T  6344237 tagtagtcttttcggtacatcttgtgctgtgaagattgctatgacagtgttaatatattccatttttgcttgtt 6344310  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 165 - 238
Target Start/End: Complemental strand, 2317450 - 2317377
Alignment:
Q  165 tagtagtctcttcggtacgtcttgtgctgagaagattgatttggcagtgttaatataatccagttttgtttgtt 238  Q
    ||||||||| ||||||||  ||||||||| ||||| || | ||| ||||||||||||||||| |||| ||||||    
T  2317450 tagtagtcttttcggtacaccttgtgctgcgaagactgctatggtagtgttaatataatccatttttatttgtt 2317377  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 238
Target Start/End: Original strand, 42964734 - 42964797
Alignment:
Q  175 ttcggtacgtcttgtgctgagaagattgatttggcagtgttaatataatccagttttgtttgtt 238  Q
    |||||||| ||||||||||||  |  || ||| ||||||||||||||||||| |||||||||||    
T  42964734 ttcggtacatcttgtgctgagggggctgctttagcagtgttaatataatccatttttgtttgtt 42964797  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 165 - 238
Target Start/End: Complemental strand, 36930728 - 36930655
Alignment:
Q  165 tagtagtctcttcggtacgtcttgtgctgagaagattgatttggcagtgttaatataatccagttttgtttgtt 238  Q
    ||||||||| |||||||| |||||||||| |||||||| | ||| |||||||||||| |||| ||||| |||||    
T  36930728 tagtagtcttttcggtacatcttgtgctgtgaagattgttatggtagtgttaatatattccatttttgcttgtt 36930655  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 166 - 238
Target Start/End: Complemental strand, 13415226 - 13415154
Alignment:
Q  166 agtagtctcttcggtacgtcttgtgctgagaagattgatttggcagtgttaatataatccagttttgtttgtt 238  Q
    |||||||| |||||||| ||||||||||||| |  || ||| | ||||||||||||||||| |||||||||||    
T  13415226 agtagtcttttcggtacatcttgtgctgagagggctgctttagtagtgttaatataatccatttttgtttgtt 13415154  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 238
Target Start/End: Original strand, 6728374 - 6728446
Alignment:
Q  166 agtagtctcttcggtacgtcttgtgctgagaagattgatttggcagtgttaatataatccagttttgtttgtt 238  Q
    |||||||| |||||||| |||| |||||| | |  || ||| ||||||||||||||||||| |||||||||||    
T  6728374 agtagtcttttcggtacatcttatgctgaaagggctgctttagcagtgttaatataatccatttttgtttgtt 6728446  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 166 - 238
Target Start/End: Original strand, 39298070 - 39298142
Alignment:
Q  166 agtagtctcttcggtacgtcttgtgctgagaagattgatttggcagtgttaatataatccagttttgtttgtt 238  Q
    |||||||| |||||||| ||||||||||||| |  || ||| |||||||||||||||| || |||||||||||    
T  39298070 agtagtcttttcggtacatcttgtgctgagagggctgctttagcagtgttaatataattcatttttgtttgtt 39298142  T

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Target: scaffold0750 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0750
Description:

Target: scaffold0750; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 238
Target Start/End: Complemental strand, 5763 - 5688
Alignment:
Q  163 tttagtagtctcttcggtacgtcttgtgctgagaagattgatttggcagtgttaatataatccagttttgtttgtt 238  Q
    ||||||||||| |||||||| ||||||||||||  |  || ||| |||||||||||||| |||| |||||||||||    
T  5763 tttagtagtcttttcggtacatcttgtgctgagtgggctgctttagcagtgttaatatattccatttttgtttgtt 5688  T

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