View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14611_low_6 (Length: 208)
Name: NF14611_low_6
Description: NF14611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14611_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 21 - 191
Target Start/End: Original strand, 1459064 - 1459231
Alignment:
| Q |
21 |
tctaaaactgctgagttgttcagaatatatcttgctaacaaaatgtgctcacgtttaaagtctggaaatccaacgtcccgcatagtgcaagttgtaaggt |
120 |
Q |
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| T |
1459064 |
tctaaaactgctgagttgttcagaatatatcttgctaacaaaatgtgctgacgg---aagtctggaaatccaatgtcccgcaaagtgcaagttgtaaggt |
1459160 |
T |
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| Q |
121 |
ttaataaaaggcaagatggaacagattttggaacggaccagtcttgtttaccataacttccatccgcccta |
191 |
Q |
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| T |
1459161 |
ttaataaaaggcaagatggaacagattttggaacggaccagtcttgtttaccataacttccatccccccta |
1459231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 21 - 153
Target Start/End: Original strand, 1445763 - 1445895
Alignment:
| Q |
21 |
tctaaaactgctgagttgttcagaatatatcttgctaacaaaatgtgctcacgtttaaagtctggaaatccaacgtcccgcatagtgcaagttgtaaggt |
120 |
Q |
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| T |
1445763 |
tctaaaactgatgaattgttcagaatatatgttgctaacatagtgtgctcatgttgaagacctgcaaatccaaagtccctcatagagcatgttttaaggc |
1445862 |
T |
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| Q |
121 |
ttaataaaaggcaagatggaacagattttggaa |
153 |
Q |
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| T |
1445863 |
ttagtgaaaggcatggtggaacaaattttggaa |
1445895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 39 - 152
Target Start/End: Original strand, 45810233 - 45810346
Alignment:
| Q |
39 |
ttcagaatatatcttgctaacaaaatgtgctcacgtttaaagtctggaaatccaacgtcccgcatagtgcaagttgtaaggtttaataaaaggcaagatg |
138 |
Q |
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| T |
45810233 |
ttcagaataaaccttgctaacataacatgattacgttgtaagcctgcaaatgcaaagtcccgcatagtgcaagtcgtgaggtttaatgaaaggcaagttg |
45810332 |
T |
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| Q |
139 |
gaacagattttgga |
152 |
Q |
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| T |
45810333 |
gaacagattttgga |
45810346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 95 - 148
Target Start/End: Complemental strand, 821373 - 821320
Alignment:
| Q |
95 |
gtcccgcatagtgcaagttgtaaggtttaataaaaggcaagatggaacagattt |
148 |
Q |
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| T |
821373 |
gtcccgcatagtgcaagttgtaaggtttaatgaaacgcaacttggaacagattt |
821320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 95 - 148
Target Start/End: Original strand, 957887 - 957940
Alignment:
| Q |
95 |
gtcccgcatagtgcaagttgtaaggtttaataaaaggcaagatggaacagattt |
148 |
Q |
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| T |
957887 |
gtcccgcatagtgcaagttgtaaggtttaatgaaaggcaacttggaactgattt |
957940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 147
Target Start/End: Complemental strand, 1400055 - 1400003
Alignment:
| Q |
95 |
gtcccgcatagtgcaagttgtaaggtttaataaaaggcaagatggaacagatt |
147 |
Q |
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|||||||||| |||||||||||||||||||| |||| ||| ||||||||||| |
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| T |
1400055 |
gtcccgcatattgcaagttgtaaggtttaatgaaagacaacttggaacagatt |
1400003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 147
Target Start/End: Complemental strand, 1403773 - 1403721
Alignment:
| Q |
95 |
gtcccgcatagtgcaagttgtaaggtttaataaaaggcaagatggaacagatt |
147 |
Q |
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| T |
1403773 |
gtcccgcatattgcaagttgtaaggtttaatgaaaggcaacttggaactgatt |
1403721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 143
Target Start/End: Complemental strand, 410517 - 410469
Alignment:
| Q |
95 |
gtcccgcatagtgcaagttgtaaggtttaataaaaggcaagatggaaca |
143 |
Q |
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|||||| ||||||||||||||||||||||| ||| ||||| ||||||| |
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| T |
410517 |
gtcccgaatagtgcaagttgtaaggtttaacgaaaagcaaggtggaaca |
410469 |
T |
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