View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14612_high_1 (Length: 539)

Name: NF14612_high_1
Description: NF14612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14612_high_1
NF14612_high_1
[»] chr6 (4 HSPs)
chr6 (1-526)||(24947319-24947842)
chr6 (76-139)||(24954178-24954241)
chr6 (226-277)||(12664505-12664556)
chr6 (9-54)||(24954070-24954115)
[»] chr1 (2 HSPs)
chr1 (222-312)||(29552563-29552653)
chr1 (222-293)||(42738900-42738971)
[»] chr2 (2 HSPs)
chr2 (229-293)||(38398107-38398171)
chr2 (222-316)||(44189661-44189754)
[»] chr5 (1 HSPs)
chr5 (222-293)||(17174060-17174131)
[»] chr7 (1 HSPs)
chr7 (237-312)||(37219616-37219691)


Alignment Details
Target: chr6 (Bit Score: 435; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 1 - 526
Target Start/End: Original strand, 24947319 - 24947842
Alignment:
Q  1 cagttgcatatttatcaatgatttagtaaaggtagctggtatataatttgaaaggaagatagtacaacatttgcatctttgttattaagtttgaattgca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24947319 cagttgcatatttatcaatgatttagtaaaggtagctggtatataatttgaaaggaagatagtacaacatttgcatctttgttattaagtttgaattgca 24947418  T
Q  101 tgctttctctcaattttttaacggttgcttagtaacaatctcttgttaaatagaaaaggatggatcctaatatcccattcacatatgctgaatttcgttt 200  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24947419 tgctttctctcaattttttaacggttgcttagtaacaatctcatgttaaatagaaaaggatggatcctaatatcccattcacatatgctgaatttcgttt 24947518  T
Q  201 cattaaatagaactacttccggtcgaaatatgtcactttcgattatgattaccaatttcggaggcttaatcctattttgtgtttttcagctgttatttag 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24947519 cattaaatagaactacttccggtcgaaatatgtcactttcgattatgattaccaatttcggaggcttaatcctattttgtgtttttcagctgttatttag 24947618  T
Q  301 tattgtctgtttgtgtttctgctgtttgtacagtaaactcgattgtgtatgtttctgttattttggtgcgtagt------tttcagtacaccaaggtaac 394  Q
    |||||||||| |||||||||||||||| | | ||        || |||||||||||||||||||||||||||||      ||||||||||||||||||||    
T  24947619 tattgtctgtctgtgtttctgctgtttctgctgt--------ttctgtatgtttctgttattttggtgcgtagttttcactttcagtacaccaaggtaac 24947710  T
Q  395 cttgtttgttaatatatcattctttggtcttttgnnnnnnntagaactacttacggtcataaaaagtaagctatttatataattaaattaaggaaatata 494  Q
    ||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24947711 cttgtttgttaatatatcattctttggtcttttgaaaaaaatagaactacttacggtcataaaaagtaagctatttatataattaaattaaggaaatata 24947810  T
Q  495 taccacaagagctgttgattaaaatggaacat 526  Q
    ||||||||||||||||||||||||||||||||    
T  24947811 taccacaagagctgttgattaaaatggaacat 24947842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 76 - 139
Target Start/End: Original strand, 24954178 - 24954241
Alignment:
Q  76 tctttgttattaagtttgaattgcatgctttctctcaattttttaacggttgcttagtaacaat 139  Q
    ||||||||||||||||||||||||||||||||| | |  ||||||| |||||||||||| ||||    
T  24954178 tctttgttattaagtttgaattgcatgctttctgttagatttttaagggttgcttagtagcaat 24954241  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 277
Target Start/End: Complemental strand, 12664556 - 12664505
Alignment:
Q  226 aaatatgtcactttcgattatgattaccaatttcggaggcttaatcctattt 277  Q
    |||||||| || ||||||||||||||||||||| || |||||||||| ||||    
T  12664556 aaatatgttacattcgattatgattaccaattttggtggcttaatcccattt 12664505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 24954070 - 24954115
Alignment:
Q  9 tatttatcaatgatttagtaaaggtagctggtatataatttgaaag 54  Q
    ||||||||||||||| || |||||||||||| ||| ||||||||||    
T  24954070 tatttatcaatgattcagaaaaggtagctggaatacaatttgaaag 24954115  T

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Target: chr1 (Bit Score: 59; Significance: 9e-25; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 222 - 312
Target Start/End: Complemental strand, 29552653 - 29552563
Alignment:
Q  222 gtcgaaatatgtcactttcgattatgattaccaatttcggaggcttaatcctattttgtgtttttcagctgttatttagtattgtctgttt 312  Q
    ||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||| ||||||  |||||||||||| |||| |||||    
T  29552653 gtcgaaatatgttgctttcgattatgattaccaattttggaggcttaatcctattttgtatttttctactgttatttagtgttgtttgttt 29552563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 222 - 293
Target Start/End: Original strand, 42738900 - 42738971
Alignment:
Q  222 gtcgaaatatgtcactttcgattatgattaccaatttcggaggcttaatcctattttgtgtttttcagctgt 293  Q
    |||||||||| | |||||||||||||||||||||||| | || ||||||| |||||| ||| ||||||||||    
T  42738900 gtcgaaatatattactttcgattatgattaccaattttgaagacttaatcttattttctgtgtttcagctgt 42738971  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 229 - 293
Target Start/End: Original strand, 38398107 - 38398171
Alignment:
Q  229 tatgtcactttcgattatgattaccaatttcggaggcttaatcctattttgtgtttttcagctgt 293  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||||| ||||| ||||| ||||    
T  38398107 tatgttactttcgattatgattaccaattttggaggcttaatcctattatgtgtgtttcaactgt 38398171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 222 - 316
Target Start/End: Complemental strand, 44189754 - 44189661
Alignment:
Q  222 gtcgaaatatgtcactttcgattatgattaccaatttcggaggcttaatcctattttgtgtttttcagctgttatttagtattgtctgtttgtgt 316  Q
    |||||||||||| |||||||||| |||| ||||||||  ||| ||||||| ||||||||||||||| ||||| || |||| |||||||| |||||    
T  44189754 gtcgaaatatgttactttcgattgtgat-accaattttagagacttaatcttattttgtgtttttctgctgtcatctagtgttgtctgtgtgtgt 44189661  T

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Target: chr5 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 222 - 293
Target Start/End: Original strand, 17174060 - 17174131
Alignment:
Q  222 gtcgaaatatgtcactttcgattatgattaccaatttcggaggcttaatcctattttgtgtttttcagctgt 293  Q
    |||||||||| | ||||||||||||||||| |||||| ||||||||||||||||||| ||| ||||| ||||    
T  17174060 gtcgaaatatattactttcgattatgattatcaattttggaggcttaatcctattttatgtgtttcaactgt 17174131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 237 - 312
Target Start/End: Complemental strand, 37219691 - 37219616
Alignment:
Q  237 tttcgattatgattaccaatttcggaggcttaatcctattttgtgtttttcagctgttatttagtattgtctgttt 312  Q
    ||||||||||||||||||||||   ||||||||||||||||||||||| ||   ||||||||||| |||| |||||    
T  37219691 tttcgattatgattaccaattttttaggcttaatcctattttgtgtttctctagtgttatttagtgttgtttgttt 37219616  T

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