View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14612_high_2 (Length: 409)
Name: NF14612_high_2
Description: NF14612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14612_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 10 - 394
Target Start/End: Original strand, 14879830 - 14880222
Alignment:
| Q |
10 |
agaagcaaaggataatgggagagaaatcaaagatacctaagatggttatctttcgtttcaaaacccgacttgatgttttgctttaccgacttggattgtc |
109 |
Q |
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| T |
14879830 |
agaaacaaaggagaatggaagagaaatcaaagatacctaagatggttatctttcgtttcaaaacccgacttgatgttttgctttaccgacttggattgtc |
14879929 |
T |
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| Q |
110 |
ttttctacttatatttctatttctnnnnnnnnn------catttttaaatggttgctatgttcttgtgtttcatatgcatgttcttgtgtttctaataat |
203 |
Q |
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| T |
14879930 |
ttttctacttatatttctatttctaaaaataaaaaaaatcatttttaaatggttgctatgttcttgtgtttcatatgcatgttcttgtgtttctaataat |
14880029 |
T |
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| Q |
204 |
tgttatattcctatgtcaaattttcatcctaataccattgttagtgttcataatatgttgtttatgtttaaaacttgtcgttttcttttgttagggtgtg |
303 |
Q |
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| T |
14880030 |
tgttatattcctatgtcaaattttcatcctaataccattgttagtgttcataatatgttgtttatgtttaaaacttgtcgttttcttttgttagggtgtg |
14880129 |
T |
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| Q |
304 |
gttagaattcctagattgtcgattctaattaccg--caagttggagaaaatatggcaaaagaacgatacaagttgaaggcgaaactaaatatt |
394 |
Q |
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| T |
14880130 |
gttagaattcctagattgtcgattctaattaccgcacaagttggagaaaatatggcaaaagaatgatacaagttgaaggcgaaactaaatatt |
14880222 |
T |
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