View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14612_high_4 (Length: 313)
Name: NF14612_high_4
Description: NF14612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14612_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 19 - 296
Target Start/End: Complemental strand, 31040669 - 31040392
Alignment:
| Q |
19 |
atgaataaggaacttgttagaatcaaaggaaaggaaggtttaactcctcttcatcttgcttgccaaagtggagaaattgaccttttagccaactttttgt |
118 |
Q |
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| T |
31040669 |
atgaataaggaacttgttagaatcaaaggaaaggaaggtttaactcctcttcatcttgcttgccaaagtggagaaattgaccttttagccaactttttgt |
31040570 |
T |
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| Q |
119 |
ttgtttgtccaaattcgatcgaagatgttactgtgaggggtgagactgcacttcatattgctgtgaaaaatgaacagtatgagtctcttcatgtcttggt |
218 |
Q |
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| T |
31040569 |
ttgtttgtccaaattcgatcgaagatgttactgtgaggggtgagactgcacttcatattgctgtgaaaaatgaacattatgagtctcttcatgtcttggt |
31040470 |
T |
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| Q |
219 |
tggttggttgaagacgactcgccagagaggtgctagggagtttgagaaattagtacttaactataaggatgagaaagg |
296 |
Q |
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| T |
31040469 |
tggttggttgaagacgactcgccagagaggtgctagggagtttgagaaattagtacttaactataaggatgagaaagg |
31040392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 19 - 198
Target Start/End: Complemental strand, 31075836 - 31075657
Alignment:
| Q |
19 |
atgaataaggaacttgttagaatcaaaggaaaggaaggtttaactcctcttcatcttgcttgccaaagtggagaaattgaccttttagccaactttttgt |
118 |
Q |
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| T |
31075836 |
atgaataaggaacttgttagaatcaaaggaagggaaggtttaactcctcttcatattgcttgtcaaaatggagaagttgaccttgtagctaatttcctat |
31075737 |
T |
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| Q |
119 |
ttgtttgtccaaattcgatcgaagatgttactgtgaggggtgagactgcacttcatattgctgtgaaaaatgaacagtat |
198 |
Q |
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| T |
31075736 |
ttgtttgtccaaattcgatccaagatgttactgtgaggggtgagactgcacttcatgttgctataaaaaataaacagtat |
31075657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 118 - 201
Target Start/End: Original strand, 24508551 - 24508634
Alignment:
| Q |
118 |
tttgtttgtccaaattcgatcgaagatgttactgtgaggggtgagactgcacttcatattgctgtgaaaaatgaacagtatgag |
201 |
Q |
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| T |
24508551 |
tttgcttgtccagaatccattgaagacgtaactgtgaggggtaagactgcattgcatattgctgtgcaaaataaccagtatgag |
24508634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 201
Target Start/End: Original strand, 30648315 - 30648368
Alignment:
| Q |
148 |
actgtgaggggtgagactgcacttcatattgctgtgaaaaatgaacagtatgag |
201 |
Q |
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| T |
30648315 |
actgtgaggcgcgagactgcactccatatttctgttaaaaatgaacaatatgag |
30648368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 107
Target Start/End: Original strand, 29552101 - 29552189
Alignment:
| Q |
19 |
atgaataaggaacttgttagaatcaaaggaaaggaaggtttaactcctcttcatcttgcttgccaaagtggagaaattgaccttttagc |
107 |
Q |
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| T |
29552101 |
atgaacaaggaccttgtcagagttaaagggaaggaaggcttgactcctcttcattatgcaagccaaattggagaggttgaccttttagc |
29552189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 52 - 210
Target Start/End: Complemental strand, 17294055 - 17293897
Alignment:
| Q |
52 |
gaaggtttaactcctcttcatcttgcttgccaaagtggagaaattgaccttttagccaactttttgtttgtttgtccaaattcgatcgaagatgttactg |
151 |
Q |
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| T |
17294055 |
gaaggcttaactcctcttcattttgcaagtcaaattggtgaggttgaacttttagctaaattactttttgcttgtccgaattccattcaagatgtgactg |
17293956 |
T |
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| Q |
152 |
tgaggggtgagactgcacttcatattgctgtgaaaaatgaacagtatgagtctcttcat |
210 |
Q |
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| T |
17293955 |
tggggggtgaaactgcactgcatattgcggtgaaaaataaaaactttgaggctcttcat |
17293897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 201
Target Start/End: Complemental strand, 26087473 - 26087294
Alignment:
| Q |
22 |
aataaggaacttgttagaatcaaaggaaaggaaggtttaactcctcttcatcttgcttgccaaagtggagaaattgaccttttagccaactttttgtttg |
121 |
Q |
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| T |
26087473 |
aataaagaacttgttagagttcaaggaagagaaggcttaactgctcttcattttgcaagtcaaattggagaggttgaccttttagctaaattcctccttg |
26087374 |
T |
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| Q |
122 |
tttgtccaaattcgatcgaagatgttactgtgaggggtgagactgcacttcatattgctgtgaaaaatgaacagtatgag |
201 |
Q |
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| T |
26087373 |
tatgtcctaattccattagagatgtgactgtgaggtgtgagaccgcattgcatattgctatcaagaatgaacaatatgag |
26087294 |
T |
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