View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14612_high_6 (Length: 286)
Name: NF14612_high_6
Description: NF14612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14612_high_6 |
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| [»] scaffold0419 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 157; Significance: 2e-83; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 11 - 209
Target Start/End: Complemental strand, 4605503 - 4605301
Alignment:
| Q |
11 |
gaagatatgagaaataatgaatcacatatttttagttaattcaacacagataaacaacttgtttttgactaggattcttgaaatccatagtaaccaattg |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4605503 |
gaagatatgagaaataatgaatcacatatttttagttaattcaacacagataaaccacttgtttttgactaggattcttgaaatccatagtaaccaattg |
4605404 |
T |
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| Q |
111 |
agagtctttttccaaccaaagagaggtcaaacc----nnnnnnnaaatctatctctattgcaatgcatagccccagtgacctctgcatgaaaagtagtag |
206 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
4605403 |
agagtctttttccaaccaaagagaggtcaaacccttttttttttaaatctatctctattgcaatgcatagccccaatgacctctgcatgaaaagtagtag |
4605304 |
T |
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| Q |
207 |
ata |
209 |
Q |
| |
|
||| |
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| T |
4605303 |
ata |
4605301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 268
Target Start/End: Complemental strand, 4605276 - 4605236
Alignment:
| Q |
228 |
ctacaaaagacatattactatctctaaaattaccaccagaa |
268 |
Q |
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| T |
4605276 |
ctacaaaggacatattactatctctaaaaataccaccagaa |
4605236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 3363697 - 3363652
Alignment:
| Q |
11 |
gaagatatgagaaataatgaatcacatatttttagttaattcaaca |
56 |
Q |
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| T |
3363697 |
gaagatatgtgaaataatgaaacacatattcgtagttaattcaaca |
3363652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 38531000 - 38531065
Alignment:
| Q |
11 |
gaagatatgagaaataatgaatcacatatttttagttaattcaacacagataaacaacttgttttt |
76 |
Q |
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| T |
38531000 |
gaagatatgagatataatgaatcacgtatttttagttaaatcagcacaattcaaccacttgttttt |
38531065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 143
Target Start/End: Original strand, 38531103 - 38531147
Alignment:
| Q |
99 |
agtaaccaattgagagtctttttccaaccaaagagaggtcaaacc |
143 |
Q |
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| T |
38531103 |
agtaaccaattaagagtatattttcaaccaaagagaggtcaaacc |
38531147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 43458789 - 43458742
Alignment:
| Q |
12 |
aagatatgagaaataatgaatcacatatttttagttaattcaacacag |
59 |
Q |
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|||||||||||||||||||||| ||||| |||||||| ||||||||| |
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| T |
43458789 |
aagatatgagaaataatgaatctaatattcttagttaactcaacacag |
43458742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 47
Target Start/End: Complemental strand, 43548164 - 43548128
Alignment:
| Q |
11 |
gaagatatgagaaataatgaatcacatatttttagtt |
47 |
Q |
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|||||||||||||||||||||| ||||||| |||||| |
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| T |
43548164 |
gaagatatgagaaataatgaataacatattcttagtt |
43548128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 47
Target Start/End: Original strand, 43550095 - 43550131
Alignment:
| Q |
11 |
gaagatatgagaaataatgaatcacatatttttagtt |
47 |
Q |
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|||||||||||||||||||||| ||||||| |||||| |
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| T |
43550095 |
gaagatatgagaaataatgaataacatattcttagtt |
43550131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0419 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0419
Description:
Target: scaffold0419; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 5472 - 5431
Alignment:
| Q |
12 |
aagatatgagaaataatgaatcacatatttttagttaattca |
53 |
Q |
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| T |
5472 |
aagatatgagaaataatgaatcgcaaattcttagttaattca |
5431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 8859884 - 8859847
Alignment:
| Q |
12 |
aagatatgagaaataatgaatcacatatttttagttaa |
49 |
Q |
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| T |
8859884 |
aagatatgagaaataatgaaacacatattcttagttaa |
8859847 |
T |
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